7VBP
Membrane arm of deactive state ci from dq-nadh dataset
PDB DOI: 10.2210/pdb7vbp/pdb
Classification: ELECTRON TRANSPORT Organism(s): Sus Scrofa
Deposited: 2021-09-01 Deposition Author(s): Gu, J.K. , Yang, M.J.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.8 Å
Membrane arm of deactive state ci from dq-nadh dataset
Primary Citation of Related Structures: 7VBP
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial | Q | 40 | Sus Scrofa | ARQWQPDVEWAEQFGGAVMYPTKETAHWKPPPWNDVDPPK |
| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6 | B | 126 | Sus Scrofa | SGYTPDEKLRLQQLRELRRRWLKDQELSPREPVLPPRRVWPMEQFWNKFLQDGAPWKNVIYKTYRHSIFAVTHVLIPVWIIHYYLKYHVTAKPYTVVERKPRIFPGDTILETGEVIPLMKEFPDQH |
| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial | C | 156 | Sus Scrofa | HVTKDMFPGPYPKTPEERAAAAKKYNMRVEDYEPYPDDGMGYGDYPKLPDRSQQERDPWYDWDHPDLRLNWGEPIHWDLDMYIRNRVDTSPTPVSWNTMCKHLFGFVAFMLFMFWVGEIYPSYQPVGPKQYPYNDLYLERGGDPTKEPEPVVHYEI |
| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 | D | 175 | Sus Scrofa | PDSWDKDVYPEPPRRTPAPAPQTSLPNPVTYLTKIFDLLVDRPVTLAREFIEQQHAKNRYYYYHREFRRVPDITECEEKDILCMFEAEMQWRRDYKVDQEIVNIIQERLKACQQREGESYRQNCAKELEQFTQVSKAFQDRYSDLGAHYSARKCLAKQKQRMLAERKAAKEAAAA |
| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial | E | 107 | Sus Scrofa | PPEPTIRLQEDPDPEDENLYEKNPDSHGYDKDPIVDLWNMRVVFFFGFSIVLVLGSTFVAYLPDYRMQEWARREAERLVKYREANGLPLMESNCFDPNKIQLPEDED |
| NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial | F | 42 | Sus Scrofa | PHGSPDWLKVGLTLGTSVFLWIYLIKQHKEDVLEYKRRNGLE |
| NADH dehydrogenase [ubiquinone] 1 subunit C2 | G | 121 | Sus Scrofa | TMMSGRPGRVPLQFLPNEARSLPPPKLTDPRLVYMGFLGYCSGLIDNAIRRRPVVSAGLHRQLLYVTSFVFFGYYLLKRQDYMYALRDHDMFAYVKSHPEDFPEKDKKTYGEILEEFHPVR |
| NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 | H | 105 | Sus Scrofa | PFFDVQKRLGLDLDRWMTIQSAEQPHKIPGRCHAFEKEWIECAHGIGGIRAEKECKIEFDDFVECLLRQKTMKRLSAIKRQRDKLIKEGKYTPPPHHLGKEDPRP |
| NADH-ubiquinone oxidoreductase chain 2 | I | 347 | Sus Scrofa | MNPIIYTTLIMTVMSGTMLVMISSHWLLIWIGFEMNLLAMIPVLMKNFNPRATEAATKYFLTQATASMMLMMAIIINLLYSGQWTITKMFNPVAMTMMTMALAMKLGLSPFHFWVPEVTQGISLQAGLLLLTWQKLAPLSVLCQISQSINPNLMLTMAMLSILIGGWGGLNQTQLRKIMAYSSIAHMGWMTAVLPYNTTMTILNLLIYITMTLAMFMLLIHSSATTTLSLSHTWNKMPVITSLMMVTLLSMGGLPPLSGFMPKWMIIQEMTKNESIIMPTLMAMTALLNLYFYMRLAYSSSLTMFPSTNNMKMKWQFEHTKQMKLLPTMIVLSTLVLPMTPALSSLN |
| NADH-ubiquinone oxidoreductase chain 3 | J | 113 | Sus Scrofa | MNIMLTLLTNVTLASLLVLIAFWLPQLNAYSEKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLKTMLTMALFLLILLAASLAYEWTQKGLEW |
| NADH-ubiquinone oxidoreductase chain 4L | K | 98 | Sus Scrofa | MPLVYMNIIMAFAIALAGLLMYRSHLMSSLLCLEGMMLSLFIMSTLIILNTHFTLANMMPIILLVFAACEAALGLSLLVMVSNTYGTDYVQNLNLLQC |
| NADH-ubiquinone oxidoreductase chain 1 | S | 318 | Sus Scrofa | MFMINILSLIIPILLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADALKLFTKEPLRPATSSISMFIIAPILALSLALTMWVPLPMPYPLINMNLGVLFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSYTLSTLITTQEHIWMIFTSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFAMFFMAEYANIIMMNAFTAILFLGASHDPHTPELYTINFVLKTLALTITFLWIRASYPRFRYDQLMHLLWKSFLPLTLALCMWHISLPIMTASIPPQS |
| NADH-ubiquinone oxidoreductase chain 5 | L | 603 | Sus Scrofa | MNPFASLTLTTLTILTIPIMMSNSNIYKTNLYPNYVKTTVSYAFTLSLVPLLMFMHTGQEMIISNWHWMTLQTVELSLSFKMDYFSVMFIPVALFVTWSIMEFSMWYMHSDPFINRFFKYLLLFLITMMILVTANNLFQLFIGWEGVGIMSFLLIGWWHGRTDANTAALQAILYNRIGDIGFVLSMAWFLTHSNAWDLQQIFMLNNECPNMPLIGLLLAAAGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRFYPLMETNKLVQTMTLCLGAITTLFTALCAITQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLHICMHAFFKAMLFMCSGSIIHSLNDEQDIRKMGGLYKAMPFTTTALIIGSLALTGMPYLTGFYSKDLIIEAVNMSYTNAWALLMTLIATSLTAAYSTRIIFFAFLGKPRFPPLVLINENNPLLINSIKRLLIGSIFAGFIISNNIPPMTVPNTTMPLYMKMTALIVTIMGFMLALELNNTTYYLKFKYPSQTYKFSNMLGYYPSIMHRLPTYHNLSMSQKSASSLLDLIWLETILPKTTSFIQMKMSIMVSNQKGLIKLYFLSFLITIMISMTLFN |
| NADH-ubiquinone oxidoreductase chain 6 | M | 175 | Sus Scrofa | MTMYIAFILSTIFVIGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEMYPEVWVSNKTVFGAFVSGLMMEFCMVYYALKEEEVEIIFKFNGLGDWVIYDTGDSGFFSEEAMGIAALYSYGTWLVIVTGWSLLIGVVVIMEITRGN |
| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1 | N | 56 | Sus Scrofa | NVLQIVRDHWVHILVPVGFVFGCYLDRRSDEKLTAFRNKSLLFKRELRPNEEVTWK |
| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 | O | 128 | Sus Scrofa | SFPKYKPSRLATLPATLDPAEYDISPETRKAQAERLAIRSRLKREYLLQYNDPNRLGVIEDPALIRWTYARSANIYPNFRPTPKTSLLGALFGIGPLFFWYYVFKTDRDKKEKLIQEGKLDQTFNISY |
| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 | P | 178 | Sus Scrofa | AFSAPAAYLTHQQKVLRLYKRALRHLESWCVHRDKYRYFACLMRARFDEHKNEKDMVKATQLLRQAEEEFWYGQHPQPYIFPESPGGTSYERYECYKVPEWCLDDWHPSEKAMYPDYFAKREQWKRLRRESWEREVKQLQEETPPGGPRTEALPPARKEGDLPPLWWHIVTRPRERPM |
| NADH-ubiquinone oxidoreductase chain 4 | R | 459 | Sus Scrofa | MLKIIIPTTMLLPMTWMSKHNMIWINATVHSLLISLISLSLLNQLGENSLNFSLTFFSDSLSAPLLVLTTWLLPLMLMASQSHLSKETTTRKKLYITMLILLQLFLIMTFTATELILFYILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALVYIQNTTGSLNFLIIHYWSHPLSNSWSNIFMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITTILNPLTNYMAYPFLMLSMWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAIMIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERVHSRTMILARGLQTLLPLMATWWLVASLTNLALPPSINLIGELFIITASFSWSNITIILMGMNMMITALYSLYMLITTQRGKYTHHINNIKPSFTRENALMALHILPLLLLTLNPKMILGPLY |
| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3 | U | 83 | Sus Scrofa | AGRIASFLKNAWAKEPVLVASFAIGGLAIILPSLSPYTNYAIRINRATPYNYPVPLRDDGNMPDVPSHPQDPQGPSLEWLKNL |
| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11 | V | 140 | Sus Scrofa | AKTLLHKYSDIPEGTECHRKAYASTSIGGATGLIVSAYSIALKPPASFLEGVARTGRYTFTSAAIGAIFGLTSCISAQVREKPDDPLNYFIGGCAGGLTLGARTRSYGIGAAACAYMGLTAALVKMGQLEGWQVFAEPKV |
| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 | W | 113 | Sus Scrofa | GYSMFAVGIGTLLFGYWSMMKWNRERRRLQIEDFEARIALMPLFQAEKDRRVLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVTPMMGELYGLRTNEEILSATYGFIWYT |
| Acyl carrier protein, mitochondrial | X | 88 | Sus Scrofa | SDAPPLTLEAIKDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIADKKDVYE |
| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial | Y | 70 | Sus Scrofa | GGVHIEPRYRQFPQLTRSQLIQAEFFSATMWFWILWRFWHDSDAVLGHFPYPDPSQWTDEELGILPDDED |
| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 | Z | 84 | Sus Scrofa | EHGHSKMELPDYKQWKIEGTPLETVQEKLAARGLRDPWGRNEAWRYSGGFANNVSFVGALLKGFKWGFAAFVVAVGAEYYLESQ |
| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial | A | 140 | Sus Scrofa | HGKRLFIIKPSGFYDRRFLKLMRFYILLTGIPVAIGITLVNVFIGEAELADIPEGYVPEHWEYFKHPISRWIARTFYDGPEKNYEKTMAILQIEAEKAELRLKELEVRRLMRARGDGPWYQYPTIDKALIDHSPKTTPDN |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2021-09-01 Deposition Author(s): Gu, J.K. , Yang, M.J.