Structure of lin28b nucleosome bound 2 oct4
PDB DOI: 10.2210/pdb7u0i/pdb
Classification: TRANSCRIPTION/DNA
Organism(s): Escherichia Coli K-12 , Homo Sapiens , Mus Musculus , Synthetic Construct
Deposited: 2022-02-18
Deposition Author(s): Bai, Y. , Guan, R. , Tengfei, L.
Structure of lin28b nucleosome bound 2 oct4
Bai, Y. , Guan, R. , Tengfei, L.
Primary Citation of Related Structures: 7U0I
Proteins | ||||
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Molecule | Chains | Sequence Length | Organism | Sequence |
Histone H3.1 | A | 136 | Escherichia Coli K-12 , Homo Sapiens , Mus Musculus , Synthetic Construct | MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
Histone H3.1 | E | 136 | Escherichia Coli K-12 , Homo Sapiens , Mus Musculus , Synthetic Construct | MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
Histone H4 | B | 103 | Escherichia Coli K-12 , Homo Sapiens , Mus Musculus , Synthetic Construct | MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
Histone H4 | F | 103 | Escherichia Coli K-12 , Homo Sapiens , Mus Musculus , Synthetic Construct | MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
Histone H2A type 2-C | C | 129 | Escherichia Coli K-12 , Homo Sapiens , Mus Musculus , Synthetic Construct | MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHKAKSK |
Histone H2A type 2-C | G | 129 | Escherichia Coli K-12 , Homo Sapiens , Mus Musculus , Synthetic Construct | MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHKAKSK |
Histone H2B type 2-E | D | 126 | Escherichia Coli K-12 , Homo Sapiens , Mus Musculus , Synthetic Construct | MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK |
Histone H2B type 2-E | H | 126 | Escherichia Coli K-12 , Homo Sapiens , Mus Musculus , Synthetic Construct | MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK |
Maltodextrin-binding protein,POU domain, class 5, transcription factor 1 | L | 550 | Escherichia Coli K-12 , Homo Sapiens , Mus Musculus , Synthetic Construct | MKEAKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPXFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAGSENLYFQGSVDSAAASDIKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICRFEALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLVQARKRKRTSIENRVRGNLENLFLQCPKPTLQQISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSEFHHHHHH |
Maltodextrin-binding protein,POU domain, class 5, transcription factor 1 | M | 550 | Escherichia Coli K-12 , Homo Sapiens , Mus Musculus , Synthetic Construct | MKEAKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPXFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAGSENLYFQGSVDSAAASDIKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICRFEALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLVQARKRKRTSIENRVRGNLENLFLQCPKPTLQQISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSEFHHHHHH |
Single-chain variable fragment | K | 265 | Escherichia Coli K-12 , Homo Sapiens , Mus Musculus , Synthetic Construct | MKSSHHHHHHENLYFQSNAMEVQLQQSGPELVEPGTSVKMPCKASGYTFTSYTIQWVKQTPRQGLEWIGYIYPYNAGTKYNEKFKGKATLTSDKSSSTVYMELSSLTSEDSAVYYCARKSSRLRSTLDYWGQGTSVTVSSGGGGSGGGGSGGGGSMDIKMTQSPSSMHASLGERVTITCKASQDIRSYLSWYQQKPWKSPKTLIYYATSLADGVPSRFSGSGSGQDFSLTINNLESDDTATYYCLQHGESPYTFGSGTKLEIKRA |
Single-chain variable fragment | N | 265 | Escherichia Coli K-12 , Homo Sapiens , Mus Musculus , Synthetic Construct | MKSSHHHHHHENLYFQSNAMEVQLQQSGPELVEPGTSVKMPCKASGYTFTSYTIQWVKQTPRQGLEWIGYIYPYNAGTKYNEKFKGKATLTSDKSSSTVYMELSSLTSEDSAVYYCARKSSRLRSTLDYWGQGTSVTVSSGGGGSGGGGSGGGGSMDIKMTQSPSSMHASLGERVTITCKASQDIRSYLSWYQQKPWKSPKTLIYYATSLADGVPSRFSGSGSGQDFSLTINNLESDDTATYYCLQHGESPYTFGSGTKLEIKRA |
Nucleic Acids / Hybrid | ||||
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Molecule | Chains | Sequence Length | Organism | Sequence |
DNA (162-MER) | i | 162 | NA | AGTGGTATTAACATATCCTCAGTGGTGAGTATTAACATGGAACTTACTCCAACAATACAGATGCTGAATAAATGTAGTCTAAGTGAAGGAAGAAGGAAAGGTGGGAGCTGCCATCACTCAGAATTGTCCAGCAGGGATTGTGCAAGCTTGTGAATAAAGACA |
DNA (162-MER) | j | 162 | NA | TGTCTTTATTCACAAGCTTGCACAATCCCTGCTGGACAATTCTGAGTGATGGCAGCTCCCACCTTTCCTTCTTCCTTCACTTAGACTACATTTATTCAGCATCTGTATTGTTGGAGTAAGTTCCATGTTAATACTCACCACTGAGGATATGTTAATACCACT |
Method: ELECTRON MICROSCOPY
Deposited Date: 2022-02-18
Deposition Author(s): Bai, Y. , Guan, R. , Tengfei, L.