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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

7U0G

Structure of lin28b nucleosome bound 3 oct4

PDB DOI: 10.2210/pdb7u0g/pdb

Classification: TRANSCRIPTION/DNA
Organism(s): Escherichia Coli K-12 , Homo Sapiens , Mus Musculus , Synthetic Construct

Deposited: 2022-02-18
Deposition Author(s): Bai, Y. , Guan, R. , Lian, T.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.6 Å

7u0g
Literature

Structure of lin28b nucleosome bound 3 oct4

Bai, Y. , Guan, R. , Lian, T.

Primary Citation of Related Structures: 7U0G


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.1 A 136 Escherichia Coli K-12 , Homo Sapiens , Mus Musculus , Synthetic Construct MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H3.1 E 136 Escherichia Coli K-12 , Homo Sapiens , Mus Musculus , Synthetic Construct MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 103 Escherichia Coli K-12 , Homo Sapiens , Mus Musculus , Synthetic Construct MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 103 Escherichia Coli K-12 , Homo Sapiens , Mus Musculus , Synthetic Construct MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A type 2-C C 129 Escherichia Coli K-12 , Homo Sapiens , Mus Musculus , Synthetic Construct MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHKAKSK
Histone H2A type 2-C G 129 Escherichia Coli K-12 , Homo Sapiens , Mus Musculus , Synthetic Construct MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHKAKSK
Histone H2B type 2-E D 126 Escherichia Coli K-12 , Homo Sapiens , Mus Musculus , Synthetic Construct MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Histone H2B type 2-E H 126 Escherichia Coli K-12 , Homo Sapiens , Mus Musculus , Synthetic Construct MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Maltodextrin-binding protein,POU domain, class 5, transcription factor 1 K 550 Escherichia Coli K-12 , Homo Sapiens , Mus Musculus , Synthetic Construct MKEAKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPXFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAGSENLYFQGSVDSAAASDIKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICRFEALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLVQARKRKRTSIENRVRGNLENLFLQCPKPTLQQISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSEFHHHHHH
Maltodextrin-binding protein,POU domain, class 5, transcription factor 1 L 550 Escherichia Coli K-12 , Homo Sapiens , Mus Musculus , Synthetic Construct MKEAKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPXFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAGSENLYFQGSVDSAAASDIKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICRFEALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLVQARKRKRTSIENRVRGNLENLFLQCPKPTLQQISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSEFHHHHHH
Maltodextrin-binding protein,POU domain, class 5, transcription factor 1 M 550 Escherichia Coli K-12 , Homo Sapiens , Mus Musculus , Synthetic Construct MKEAKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPXFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAGSENLYFQGSVDSAAASDIKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICRFEALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLVQARKRKRTSIENRVRGNLENLFLQCPKPTLQQISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSEFHHHHHH
Single-chain variable fragment N 265 Escherichia Coli K-12 , Homo Sapiens , Mus Musculus , Synthetic Construct MKSSHHHHHHENLYFQSNAMEVQLQQSGPELVEPGTSVKMPCKASGYTFTSYTIQWVKQTPRQGLEWIGYIYPYNAGTKYNEKFKGKATLTSDKSSSTVYMELSSLTSEDSAVYYCARKSSRLRSTLDYWGQGTSVTVSSGGGGSGGGGSGGGGSMDIKMTQSPSSMHASLGERVTITCKASQDIRSYLSWYQQKPWKSPKTLIYYATSLADGVPSRFSGSGSGQDFSLTINNLESDDTATYYCLQHGESPYTFGSGTKLEIKRA
Single-chain variable fragment O 265 Escherichia Coli K-12 , Homo Sapiens , Mus Musculus , Synthetic Construct MKSSHHHHHHENLYFQSNAMEVQLQQSGPELVEPGTSVKMPCKASGYTFTSYTIQWVKQTPRQGLEWIGYIYPYNAGTKYNEKFKGKATLTSDKSSSTVYMELSSLTSEDSAVYYCARKSSRLRSTLDYWGQGTSVTVSSGGGGSGGGGSGGGGSMDIKMTQSPSSMHASLGERVTITCKASQDIRSYLSWYQQKPWKSPKTLIYYATSLADGVPSRFSGSGSGQDFSLTINNLESDDTATYYCLQHGESPYTFGSGTKLEIKRA

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (162-MER) i 162 NA AGTGGTATTAACATATCCTCAGTGGTGAGTATTAACATGGAACTTACTCCAACAATACAGATGCTGAATAAATGTAGTCTAAGTGAAGGAAGAAGGAAAGGTGGGAGCTGCCATCACTCAGAATTGTCCAGCAGGGATTGTGCAAGCTTGTGAATAAAGACA
DNA (162-MER) j 162 NA TGTCTTTATTCACAAGCTTGCACAATCCCTGCTGGACAATTCTGAGTGATGGCAGCTCCCACCTTTCCTTCTTCCTTCACTTAGACTACATTTATTCAGCATCTGTATTGTTGGAGTAAGTTCCATGTTAATACTCACCACTGAGGATATGTTAATACCACT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-02-18
Deposition Author(s): Bai, Y. , Guan, R. , Lian, T.