PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

7SK7

Cryo-em structure of human ackr3 in complex with cxcl12, a small molecule partial agonist ccx662, and an extracellular fab

PDB DOI: 10.2210/pdb7sk7/pdb

Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Organism(s): Homo Sapiens , Lama Glama

Deposited: 2021-10-19
Deposition Author(s): Gustavsson, M. , Handel, T.M. , Schafer, C.T. , Tesmer, J.J.G. , Yen, Y.C.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.3 Å

7sk7
Literature

Cryo-em structure of human ackr3 in complex with cxcl12, a small molecule partial agonist ccx662, and an extracellular fab

Gustavsson, M. , Handel, T.M. , Schafer, C.T. , Tesmer, J.J.G. , Yen, Y.C.

Primary Citation of Related Structures: 7SK7


Proteins
Molecule Chains Sequence Length Organism Sequence
Atypical chemokine receptor 3 A 393 Homo Sapiens , Lama Glama GAPDLHLFDYSEPGNFSDISWPCNSSDCIVVDTVMCPNMPNKSVLLYTLSFIYIFIFVIGMIANSVVVWVNIQAKTTGYDTHCYILNLAIADLWVVLTIPVWVVSLVQHNQWPMGELTCKVTHLIFSINLFGSIFFLTCMSVDRYLSITYFTNTPSSRKKMVRRVVCILVWLLAFCVSLPDTYYLKTVTSASNNETYCRSFYPEHSIKEWLIGMELVSVVLGFAVPFSIIAVFYFLLARAISASSDQEKHSSRKIIFSYVVVFLVCWLPYHVAVLLDIFSILHYIPFTCRLEHALFTALHVTQCLSLVHCCVNPVLYSFINRNYRYELMKAFIFKYSAKTGLTKLIDASRVSETEYSALEQSTKGRPLEVLFQGPHHHHHHHHHHDYKDDDDK
Stromal cell-derived factor 1 B 68 Homo Sapiens , Lama Glama KPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQEYLEKALNK
CID25 Fab light chain C 215 Homo Sapiens , Lama Glama SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQYYYPLFTFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
CID25 Fab heavy chain D 236 Homo Sapiens , Lama Glama EISEVQLVESGGGLVQPGGSLRLSCAASGFNFSYSSIHWVRQAPGKGLEWVAYIYSSYGYTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARVYPWWYYKYYHGALDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT
Anti-Fab nanobody K 123 Homo Sapiens , Lama Glama GSQVQLQESGGGLVQPGGSLRLSCAASGRTISRYAMSWFRQAPGKEREFVAVARRSGDGAFYADSVQGRFTVSRDDAKNTVYLQMNSLKPEDTAVYYCAIDSDTFYSGSYDYWGQGTQVTVSS
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2021-10-19
Deposition Author(s): Gustavsson, M. , Handel, T.M. , Schafer, C.T. , Tesmer, J.J.G. , Yen, Y.C.