7RYG
A. baumannii ribosome-tp-6076 complex: e-site trna 70s
PDB DOI: 10.2210/pdb7ryg/pdb
Classification: Ribosome/RNA Organism(s): Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057
Deposited: 2021-08-25 Deposition Author(s): Morgan, C.E. , Yu, E.W.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.38 Å
A. baumannii ribosome-tp-6076 complex: e-site trna 70s
Primary Citation of Related Structures: 7RYG
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 50S ribosomal protein L33 | 0 | 51 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MRDKIRLVSSAGTGYFYTTTKNKRTMPEKMEIKKFDPKIRQHVIFKEAKIK |
| 30S ribosomal protein S6 | F | 127 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MRHYEIVLLVHPDQSDQVVGMVERYISQIKEADGQIHRLEDWGRRQLAYPINKIHKAHYILMNVECGQSTLDELEELFRYNDAIIRNLIIRREHAITEESLLAKSAEEKRARKAQREEAQQVAQEAE |
| 30S ribosomal protein S7 | G | 156 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MPRRRVVAAREILPDPKFSSQTIAKFMNHVMQDGKKSIAESIVYGALERVQEKNKVDPVEFFETTLEKVRPMVEVKARRVGGATYQVPMEVRPSRRTALAMRWLVDAAAKRSEKTMALRLAGELLDAAEGKGAAIKKREDVHRMAEANKAFSHYRF |
| 30S ribosomal protein S8 | H | 131 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MSMQDTVADMLTRVRNAQMAKKQTVSMPSSKLKVAIANVLQQEGYISNVEVAQEETKSTLTITLKYFEGKPVIEMVKRVSRPGLRQYRGKDKLPSVKQGLGIAIVSTSKGIMTDRAARAAGIGGEVIAFVS |
| 30S ribosomal protein S9 | I | 128 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MATNYGTGRRKTATARVFLSAGTGKLVINNRTLEQYFGRETARMVVRQPLELLEATEKYDLYITVKGGGIGGQAGAIRHGITRALIAADETLKPVLRQAGFVTRDAREVERKKLGLRKARKRPQFSKR |
| 30S ribosomal protein S10 | J | 103 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MSNQRIRIRLKSFDHRLIDQSAQEIVETAKRTGAQVCGPIPMPTRIERFNVLTSPHVNKDARDQYEIRTYKRLIDIVQPTDKTVDALMKLDLAAGVDVQIALG |
| 30S ribosomal protein S11 | K | 128 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MAKDTRTRKKVTRTVSEGVAHIHASFNNTIVTITDRQGNALAWATSGGQGFRGSRKSTPFAAQVAAEVAGKAALDYGLKNLDVLVKGPGPGRESAVRALGAVGYKINSITDVTPIPHNGCRPPKKRRV |
| 30S ribosomal protein S12 | L | 124 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MATTNQLIRKGRTTLVEKSKVPALKACPQRRGVCTRVYTTTPKKPNSAMRKVCRVRLTSGFEVSSYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGSLDCAGVKDRNQSRSKYGAKRPKK |
| 30S ribosomal protein S13 | M | 118 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MARIAGVNIPDNKHAVISLTYIFGIGRHTAKNILAAVGITETTKIRELDDAQLDAIRAEVAKVPTEGDLRREISMNIKRLMDLGCYRGLRHRRSLPVRGQRTKTNARTRKGPRKPIKK |
| 30S ribosomal protein S14 | N | 101 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MAKKGMINRELKREKTVAKYAAKRAELKATIANVNASDEERFEAMLKLQALPRNASPVRLRNRCGLTGRPHGYFRKFGLSRNKLRDTVMQGDVPGVVKASW |
| 30S ribosomal protein S15 | O | 89 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MALTNADRAEIIAKFARAENDTGSPEVQVALLTAQINDLQGHFKAHKHDHHSRRGLIRMVNQRRKLLDYLNGKDHERYTALIGALGLRR |
| 50S ribosomal protein L34 | 1 | 44 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MKRTFQPSELKRKRVHGFRARMATKAGRQVLARRRAKGRHSLTV |
| 30S ribosomal protein S16 | P | 101 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MLPMVGAGIIRKNYKAFIMVVIRLARGGAKKRPFYQIVVTDSRNARDGRFIERIGFFNPTAQGQAEKLRLDADRFAHWVSQGAQPSERVASLAAQAKKATA |
| 30S ribosomal protein S17 | Q | 85 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MSEKTVRTLTGKVVSDKMDKSIVVLIERRVQHPLYGKSIRRSTKLHAHDENNVAKIGDVVTIKESRPISKTKAWTLVEVVEAAAE |
| 30S ribosomal protein S18 | R | 75 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MARFYRRRKFCRFTAENVAYIDYKDIDTLKQYITENGKIVPSRITGTKARYQRQLALAIKQARYLSLIPYTDNHK |
| 30S ribosomal protein S19 | S | 91 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MPRSLKKGPFVDAHLFAKVEAAVASNSRKPIKTWSRRSMILPDFVGLTISVHNGRNHVPVIVTEHMVGHKLGEFAPTRTYRGHGVDKKSKR |
| 30S ribosomal protein S20 | T | 88 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MANSAQAKKRARQNVKARKHNASLRSMVRTYIKRTLSAIAGGDYAVATEAYKKAVPVIDRMADKGIIHKNKAARHKSRLNAQVKALAN |
| 30S ribosomal protein S21 | U | 71 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MPQVKLKEGEPVDVAIRRFKRSCEKAGVLADVRKREFYEKPTQERKRKKAAAVKRYQKKLARESVRTTRLY |
| 50S ribosomal protein L29 | X | 65 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MKTKDLREKSVEELKALLDEQQLNQFRLRMAKATGQLGKSHEVQVARKTIARIKTLLTEKQGNGQ |
| 50S ribosomal protein L30 | Y | 58 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MKTIKVTQTKSSSHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE |
| 50S ribosomal protein L35 | 2 | 64 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MAKLKTRRGAAKRFKATANGFKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSDVASVRRMCPYI |
| 50S ribosomal protein L32 | Z | 61 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MAVQQNRKSRSRRDMRRSHDALTENALTVDQATGETHRRHHVTKDGFYRGRQLFAKAADAE |
| 50S ribosomal protein L2 | C | 274 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MPIQKCKPTSPGRRFVEKVVHDHLHKGAPYAPLVEAKKRTGGRNNNGHITTRHVGGGHKQHYRIVDFKRNKDGVPAVVERIEYDPNRTAHIALLKYADGERRYIIAPKGLRAGDKVQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGRDGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAGAARWRGVRPTVRGMAMNPIDHPHGGGEGRNKGIQPVSPWGQKAKGYKTRTNKRTTKMIIRDRRVK |
| 50S ribosomal protein L3 | D | 212 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MAIGLVGRKCGMTRIFTDAGVSVPVTVIEVDPNRITQIKTLETDGYQAVQVTTGERRESRVTNAQKGHFAKAGVAAGRLVKEFRVTEAELEGREVGGTIGVDLFTVGQIVDVTGQSKGKGFQGGVKRWNFRTQDATHGNSVSHRVLGSTGQNQTPGRVFKGKKMAGHLGDERVTVQGLEIVSVDTERSVLVVKGAIPGATGGDVIVRPTIKA |
| 50S ribosomal protein L4 | E | 200 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MNLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAHKSRADVSGGGKKPFRQKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLVEEFAVAAPKTKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLIAFDKVVMSVAAAKKIEVELG |
| 50S ribosomal protein L36 | 3 | 38 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MKVQASVKKICGSCKVIRRNGVIRVICSAEPRHKQRQG |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| tRNA-met | v | 77 | NA | GGCUAUGUAGCUCAGUUGGUUAGAGCACCGCACUCAUAAUGCGGGGGUCACAAGUUCAAGUCUCGUCAUAGCCACCA |
| mRNA | w | 3 | NA | AUG |
| 23S ribosomal RNA | a | 2918 | NA | GUUGUAUAGUCAAGUAAUUAAGUGCAUGUGGUGGAUGCCUUGGCAGUCAGAGGCGAUGAAAGACGUGAUAGCCUGCGAAAAGCUCCGGGGAGGCGGCAAAUAUCCUUUGAUCCGGAGAUGUCUGAAUGGGGGAACCCACCUACUUUAAGGUAGGUAUUGCAACAUGAAUACAUAGUGUUGCAAGGCGAACGAGGGGAAGUGAAACAUCUCAGUACCCUUAGGAAAAGAAAUCAAUUGAGAUUCCCUCAGUAGCGGCGAGCGAACGGGGAUCAGCCCAUUAAGUUAUGUGUGUUUUAGUGGAACGCUCUGGGAAGUGCGAACGUAGAGGGUGAUAUUCCCGUACACGAAAGGGCACACAUAAUGAUGACGAGUAGGGCGAGGCACGUGAAACCUUGUCUGAAUAUGGGGGGACCAUCCUCCAAGGCUAAAUACUCCUGACUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGCGAAAAGAACCCCUGUGAGGGGAGUGAAAUAGAUCCUGAAACCGCAUGCAUACAAGCAGUGGGAGCACCUUCGUGGUGUGACUGCGUACCUUUUGUAUAAUGGGUCAGCGACUUAUAUUCAGUAGCGAGGUUAACCGUAUAGGGGAGCCGUAGAGAAAUCGAGUCUUAAUAGGGCGUUUAGUUGCUGGGUAUAGACCCGAAACCAGGCGAUCUAUCCAUGAGCAGGUUGAAGGUUGGGUAACACUAACUGGAGGACCGAACCCACUGUCGUUGAAAAGCCAGGGGAUGACUUGUGGAUAGGGGUGAAAGGCUAAUCAAGCCUGGUGAUAGCUGGUUCUCCCCGAAAGCUAUUUAGGUAGCGCCUCGGACGAAUACCAUAGGGGGUAGAGCACUGUUUCGGCUAGGGGGUCAUCCCGACUUACCAAACCGAUGCAAACUCCGAAUACCUAUGAGUACUAUCCGGGAGACAGACUGCGGGUGCUAACGUCCGUAGUCAAGAGGAAAACAAUCCAGACCGCCAGCUAAGGCCCCAAAAUCAUAGUUAAGUGGGAAACGAUGUGGGAAGGCAUAGACAGCUAGGAGGUUGGCUUAGAAGCAGCCACCCUUUAAAGAAAGCGUAAUAGCUCACUAGUCGAGUCGGCCUGCGCGGAAGAUGUAACGGGGCUAAAACUAUGUGCCGAAGCUGCGGAUGUAUACUUUGUAUACGUGGUAGGGGAGCGUUCUGUAAGCCGAUGAAGGUGUGUUGAGAAGCAUGCUGGAGGUAUCAGAAGUGCGAAUGCUGACGUGAGUAACGACAAAACGGGUGAAAAACCCGUUCGCCGAAAGACCAAGGGUUCCAGUCCAACGUUAAUCGGGGCUGGGUGAGUCGACCCCUAAGGCGAGGCCGAAAGGCGUAGUCGAUGGGAAAAUGGUUAAUAUUCCAUUACUUCUGUGUAAUGCGAUGAGAGGACGGAGAAGGCUAAAUCAGCCUGGCGUUGGUUGUCCAGGUGAAAGGAUGUAGGCAUGUAUCUUAGGCAAAUCCGGGGUACUCUAUGCUGAGAUCUGAUAGCAAGCUGUACUUGUGCAGCGAAGUGGUUGAUGCCAUGCUUCCAGGAAAAGUCUCUAAGCUUCAGUUACACAGGAAUCGUACCCGAAACCGACACAGGUGGUCAGGUCGAGUAGACCAAGGCGCUUGAGAGAACUCUGCUGAAGGAACUAGGCAAAAUGGUACCGUAACUUCGGGAGAAGGUACGCUGUUGUUGGUGAUGGAACUCGCUUCCUGAGCUGACGACAGCCGCAGAAACCAGGCCGCUGCAACUGUUUAUUAAAAACAUAGCACUCUGCAAACACGAAAGUGGACGUAUAGGGUGUGAUGCCUGCCCGGUGCUGGAAGGUUAAUUGAUGGGGUUAGCGUAAGCGAAGCUCUUGAUCGAAGCCCCAGUAAACGGCGGCCGUAACXAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGCAUAAUGAUGGCGGCGCUGUCUCCAGCAGAGGCUCAGUGAAAUCGAAAUCGCUGUGAAGAUGCAGUGUACCCGCGGCUAGACGGAAAGACCCCGUGAACCUUUACUGCAGCUUGACACUGAACUUUGACCUUACUUGUGUAGGAUAGGUGGGAGGCUUUGAAGCUGGAACGCUAGUUCCAGUGGAGCCGUCCUUGAAAUACCACCCUGGUAAUGUUGAGGUUCUAACUCUGUCCCGUGAUCCGGGACGAGGACCGUGUCUGGUGGGUAGUUUGACUGGGGCGGUCUCCUCCUAAAGAGUAACGGAGGAGUACGAAGGUGCGCUCAGCGUGGUCGGAAAUCACGCGUAGAGUAUAAAGGCAAAAGCGCGCUUAACUGCGAGACCCACAAGUCGAGCAGGUACGAAAGUAGGUCUUAGUGAUCCGGUGGUUCUGUAUGGAAGGGCCAUCGCUCAACGGAUAAAAGGUACUCUGGGGAUAACAGGCUGAUACCGCCCAAGAGUUCAUAUCGACGGCGGUGUUUGGCACCUCGAUGUCGGCUCAUCUCAUCCUGGGGCUGAAGCAGGUCCCAAGGGUAUGGCUGUUCGCCAUUUAAAGAGGUACGCGAGCUGGGUUUAGAACGUCGUGAGACAGUUCGGUCCCUAUCUACCGUGGGCGCUGGAAAUUUGAGAGGAUCUGCUCCUAGUACGAGAGGACCAGAGUGGACGAACCUCUGGUGUACCGGUUGUGACGCCAGUCGCAUCGCCGGGUAGCUAUGUUCGGAAGGGAUAACCGCUGAAAGCAUCUAAGCGGGAAGCCUACCUCAAGAUAAGAUUUCCCUAGGACUUUAUGUCCUCUAAAGAGCCGUUCGAGACUAGGACGUUGAUAGGUUGGAUGUGGAAGCAUAGUGAUAUGUGAAGCUGACCAAUACUAAUUGCUCGUGAGGCUUGACUAUACAACACCCAAGCAGUUG |
| 5S ribosomal RNA | b | 115 | NA | GCUGGCGACCAUAGCAAGAGUGAACCACCUGAUCCCUUCCCGAACUCAGAAGUGAAACCUCUUAGCGCUGAUGGUAGUGUGGGAUUACCCAUGUGAGAGUAAGUCAUCGCCAGCU |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2021-08-25 Deposition Author(s): Morgan, C.E. , Yu, E.W.