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7QIY

Specific features and methylation sites of a plant ribosome. 40s head ribosomal subunit.

PDB DOI: 10.2210/pdb7qiy/pdb

Classification: RIBOSOME
Organism(s): Solanum Lycopersicum

Deposited: 2021-12-16
Deposition Author(s): Amunts, A. , Cottilli, P. , Itoh, Y.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.58 Å

7qiy
Literature

Specific features and methylation sites of a plant ribosome. 40s head ribosomal subunit.

Amunts, A. , Cottilli, P. , Itoh, Y.

Primary Citation of Related Structures: 7QIY


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
18S rRNA head 2 1806 NA UACCUGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUGUAAGUAUGAACAAAUUCAGACUGUGAAACUGCGAAUGGCUCAUUAAAUCAGUUAUAGUUUGUUUGAUGGUAUCUACUACUCGGAUAACCGUAGUAAUUCUAGAGCUAAUACGUGCAACAAACCCCGACUUCUGGAAGGGAUGCAUUUAUUAGAUAAAAGGUCGACGCGGGCUCUGCCCGUUGCUGCGAUGAUUCAUGAUAACUCGACGGAUCGCACGGCCAUCGUGCCGGCGACGCAUCAUUCAAAUUUCUGCCCUAUCAACUUUCGAUGGUAGGAUAGUGGCCUACCAUGGUGGUGACGGGUGACGGAGAAUUAGGGUUCGAUUCCGGAGAGGGAGCCUGAGAAACGGCUACCACAUCCAAGGAAGGCAGCAGGCGCGCAAAUUACCCAAUCCUGACACGGGGAGGUAGUGACAAUAAAUAACAAUACCGGGCUCUAUGAGUCUGGUAAUUGGAAUGAGUACAAUCUAAAUCCCUUAACGAGGAUCCAUUGGAGGGCAAGUCUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAAUUUAAGUUGUUGCAGUUAAAAAGCUCGUAGUUGGACUUUGGGAUGGGCCGGCCGGUCCGCCCUAGGUGUGCACCGGUCGUCUCGUCCCUUCUGUCGGCGAUGCGCUCCUGGCCUUAAUUGGCCGGGUCGUGCCUCCGGCGCUGUUACUUUGAAGAAAUUAGAGUGCUCAAAGCAAGCCUACGCUCUGUAUACAUUAGCAUGGGAUAACAUUAUAGGAUUUCGGUCCUAUUACGUUGGCCUUCGGGAUCGGAGUAAUGAUUAACAGGGACAGUCGGGGGCAUUCGUAUUUCAUAGUCAGAGGUGAAAUUCUUGGAUUUAUGAAAGACGAACAACUGCGAAAGCAUUUGCCAAGGAUGUUUUCAUUAAUCAAGAACGAAAGUUGGGGGCUCGAAGACGAUCAGAUACCGUCCUAGUCUCAACCAUAAACGAUGCCGACCAGGGAUCGGCGGAUGUUGCUUUUAGGACUCCGCCGGCACCUUAUGAGAAAUCAAAGUUUUUGGGUUCCGGGGGGAGUAUGGUCGCAAGGCUGAAACUUAAAGGAAUUGACGGAAGGGCACCACCAGGAGUGGAGCCUGCGGCUUAAUUUGACXCAACACGGGGAAACUUACCAGGUCCAGACAUAGUAAGGAUUGACAGACUGAGAGCUCUUUCUUGAUUCUAUGGGUGGUGGUGCAUGGCNGUUCUUAGUUGGUGGAGCGAUUUGUCUGGUUAAUUCCGUUAACGAACGAGACCUCAGCCUGCUAACUAGCUAUGCGGAGGUAUCCCUUCGCGGCCAGCUUCUUAGAGGGACUACGGCCUUUUAGGCCGCGGAAGUUUGAGGCAAUAACAGGUCUGUGAUGCCCUUAGAUGUUCUGGGCCGCACGCGCGCUACACUGAUGUAUUCAACGAGCUUAUAGCCUUGGCCGACAGGCCCGGGUAAUCUUUGAAAUUUCAUCGUGAUGGGGAUAGAUCAUUGCAAUUGUUGGUCUUCAACGAGGAAUUCCUAGUAAGCGCGAGUCAUCAGCUCGCGUUGACUACGUCCCUGCCCUUUGUACACACCGCCCGUCGCUCCUACCGAUUGAAUGAUCCGGUGAAAUGUUCGGAUCGCGGCGACGUGGGCGGUUCGCUGCCCGCGACGUCGCGAGAAGUCCAUUGAACCUUAUCAUUUAGAGGAAGGAGAAGUCGUAACAAGGUUUCGUAGGUGAACCUGCGGAAGGAUCAUUG
tRNA q 14 NA AGGCUGAUAACCUA
mRNA r 3 NA AUC

Proteins
Molecule Chains Sequence Length Organism Sequence
Ribosomal_S10 domain-containing protein L 123 Solanum Lycopersicum MAAYAAMKPTKPGLEEPAEMIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAES
40S head ribosomal protein eS28 M 65 Solanum Lycopersicum MESVTKHAIVIKIMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESEREARRLR
40S ribosomal protein S29 N 56 Solanum Lycopersicum MGHSNIWNAHPKNYGPGSRTCRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFIKYR
Mitogen-activated protein kinase O 326 Solanum Lycopersicum MSQESLVLRGTMKAHTDWVTAIATPIDNSDMIVTSSRDKSIIVWSLTKDGSQYGVPRRRLTGHGHFVEDVVLSSDGMFALSGSWDGELRLWDLQAGTTARRFVGHTKDVLSVAFSVDNRQIVSASRDKTIKLWNTLGECKYTIQEQDSHSDWVSCVRFSPNNLQPTIVSGSWDRTVKIWNLTNCKLRSTLAGHSGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLDAGSIIHTLCFSPNRYWLCAATESSIKIWDLESKSIVVDLKVDLKQESEMFGTAATDSKTKVIYCTSLSWSADGSTLFSGYTDGLIRVWGIGRY
40S ribosomal protein S25 P 108 Solanum Lycopersicum MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDKGTYDKLITEAPKYKLITPSVLSDRLRISGSLARKAIRELMAKGLIRMVSAHASQQIYTRATNT
KH type-2 domain-containing protein D 239 Solanum Lycopersicum MAKQSVQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGDKGRRIRELTSVVQKRFNFDENTVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPTTPLPDLVTIHPPKEEEEYLRLPVAAPVEIDPPIVV
Ribosomal_S7 domain-containing protein E 211 Solanum Lycopersicum MEEASVVAVDNQKPQQEKPHTDVLLFNRWSYDGVQIADMSVEDYITATANKHPTYMPHTAGRYQAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
S10_plectin domain-containing protein F 180 Solanum Lycopersicum MIIPEKNRREISKYLFQEGVCFAKKDYNLAKHPNIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPLGRPMGGPPGDRPRGPPRFEGDRPRFGDRDGYRAGPRGPPGEFGGEKGGAPADYQPAFRGGGGRPGFGRGAGGFGGAPPSSSS
40S head ribosomal protein uS19 G 151 Solanum Lycopersicum MAEVEADVATGQPRKRTFKKFSYRGVDLDSLLDMSTDELVKLYPARPRRRFQRGLKRKPMALIKKLRKAKREAPQGEKPEVVRTHLRNMIIVPEMIGSVIGIYNGKTFNQIEVKPEMISHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
40S head ribosomal protein uS9 H 147 Solanum Lycopersicum MQAAPATVESVQCFGRKKTAVAVTHCKRGRGLIKINGVPIELVQPEILRYKAFEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQQKKEIKDILIRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR
40S ribosomal protein S17 I 144 Solanum Lycopersicum MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMSDLPGVVKQAAEPQAVAALPSYGRGGGGFGRKY
40S head ribosomal protein uS13 J 152 Solanum Lycopersicum MSLVANEEFQHILRVQNTNVDGKQKIMFALTSIKGIGRRFANIACKKADIDMNKRAGELTAAELDSLMVVVANPRQFKIPDWFLNRQKDYKDGKFSQVTSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
40S head ribosomal protein eS19 K 143 Solanum Lycopersicum MEPARSVKDVSPHDFVKAYAAHLKRSGKLELPEWTDIVKTGKLKELAPYDPDWYYIRAASMARKIYLRGGIGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLQTMNIIDFDPKGGRRITSNGQRDLDQVAGRISAAN
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2021-12-16
Deposition Author(s): Amunts, A. , Cottilli, P. , Itoh, Y.