7QH7
Cryo-em structure of the human mtlsu assembly intermediate upon mrm2 depletion - class 4
PDB DOI: 10.2210/pdb7qh7/pdb
Classification: RIBOSOME Organism(s): Homo Sapiens
Deposited: 2021-12-10 Deposition Author(s): Dent, K.C. , Minczuk, M. , Pellegrino, S. , Rebelo-Guiomar, P. , Warren, A.J.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.89 Å
Cryo-em structure of the human mtlsu assembly intermediate upon mrm2 depletion - class 4
Dent, K.C. , Minczuk, M. , Pellegrino, S. , Rebelo-Guiomar, P. , Warren, A.J.
Primary Citation of Related Structures: 7QH7
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 39S ribosomal protein L45, mitochondrial | D | 169 | Homo Sapiens | ASQVSIRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIKYKTVRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPKDVLEYVVFEKQLTNPYGSWRMHTKIVPPWAPPKQPILKTVMIPGP |
| Ribosomal protein 63, mitochondrial | O | 81 | Homo Sapiens | RRPRFVSLRAKQNMIRRLEIEAENHYWLSMPYMTREQERGHAAVRRREAFEAIKAAATSKFPPHRFIADQLDHLNVTKKWS |
| Peptidyl-tRNA hydrolase ICT1, mitochondrial | P | 125 | Homo Sapiens | EFKSIYSLDKLYPESQGSDTAWRVDIPLDRLTISYCRNSKAEVRFHLATAEWIAEPVRQKIAITHKNKINRLGELILTSESSRYQFRNLADCLQKIRDMITEASQKLHRIRIENMNRERLRQKRI |
| Growth arrest and DNA damage-inducible proteins-interacting protein 1 | Q | 101 | Homo Sapiens | YRARPPPRRRPGPRWPDPEDLLTPRWQLGPRYAAKQFARYGAASGVVPGSLWPSPEQLRELEAEEREWYPSLATMQESLRVKQLAEEQKRREREQHIAECM |
| 39S ribosomal protein S18a, mitochondrial | R | 140 | Homo Sapiens | PKESPNPPNPSGQCPICRWNLKHKYNYDDVLLLSQFIRPHGGMLPRKITGLCQEEHRKIEECVKMAHRAGLLPNHRPRLPEGVVPKSKPQLNRYLTRWAPGSVKPIYKKGPRWNRVRMPVGSPLLRDNVCYSRTPWKLYH |
| 39S ribosomal protein S30, mitochondrial | S | 390 | Homo Sapiens | VARYPPIVASMTADSKAARLRRIERWQATVHAAESVDEKLRILTKMQFMKYMVYPQTFALNADRWYQYFTKTVFLSGLPPPPAEPEPEPEPEPEPALDLAALRAVACDCLLQEHFYLRRRRRVHRYEESEVISLPFLDQLVSTLVGLLSPHNPALAAAALDYRCPVHFYWVRGEEIIPRGHRRGRIDDLRYQIDDKPNNQIRISKQLAEFVPLDYSVPIEIPTIKCKPDKLPLFKRQYENHIFVGSKTADPCCYGHTQFHLLPDKLRRERLLRQNCADQIEVVFRANAIASLFAWTGAQAMYQGFWSEADVTRPFVSQAVITDGKYFSFFCYQLNTLALTTQADQNNPRKNICWGTQSKPLYETIEDNDVKGFNDDVLLQIVHFLLNRPK |
| 39S ribosomal protein L22, mitochondrial | T | 166 | Homo Sapiens | ISRKWEKKNKIVYPPQLPGEPRRPAEIYHCRRQIKYSKDKMWYLAKLIRGMSIDQALAQLEFNDKKGAKIIKEVLLEAQDMAVRDHNVEFRSNLYIAESTSGRGQCLKRIRYHGRGRFGIMEKVYCHYFVKLVEGPPPPPEPPKTAVAHAKEYIQQLRSRTIVHTL |
| Mitochondrial assembly of ribosomal large subunit protein 1 | U | 111 | Homo Sapiens | KFDIDMMVSLLRQENARDICVIQVPPEMRYTDYFVIVSGTSTRHLHAMAFYVVKMYKHLKCKRDPHVKIEGKDTDDWLCVDFGSMVIHLMLPETREIYELEKLWTLRSYDD |
| MIEF1 upstream open reading frame protein | V | 69 | Homo Sapiens | APWSREAVLSLYRALLRQGRQLRYTDRDFYFASIRREFRKNQKLEDAEARERQLEKGLVFLNGKLGRII |
| Acyl carrier protein, mitochondrial | W | 79 | Homo Sapiens | LTLEGIQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIADKK |
| 39S ribosomal protein L28, mitochondrial | X | 243 | Homo Sapiens | PLHKYPVWLWKRLQLREGICSRLPGHYLRSLEEERTPTPVHYRPHGAKFKINPKNGQRERVEDVPIPIYFPPESQRGLWGGEGWILGQIYANNDKLSKRLKKVWKPQLFEREFYSEILDKKFTVTVTMRTLDLIDEAYGLDFYILKTPKEDLCSKFGMDLKRGMLLRLARQDPQLHPEDPERRAAIYDKYKEFAIPEEEAEWVGLTLEEAIEKQRLLEEKDPVPLFKIYVAELIQQLQQQALS |
| 39S ribosomal protein L3, mitochondrial | E | 304 | Homo Sapiens | SGTWWDEHLSEENVPFIKQLVSDEDKAQLASKLCPLKDEPWPIHPWEPGSFRVGLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKENCNGKMATLSVGGKTVSRFRKATSILEFYRELGLPPKQTVKIFNITDNAAIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAVATGDIGRVWPGTKMPGKMGNIYRTEYGLKVWRINTKHNIIYVNGSVPGHKNCLVKVKDSKLPAYKDLGKNLPFPTYFPDGDEEELPEDLYDENVCQPGAPSITFA |
| 39S ribosomal protein L47, mitochondrial | Y | 175 | Homo Sapiens | GLEEFFDDPKNWGQEKVKSGAAWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQRLPMPSPERLDKVVDSMDALDKVVQEREDALRLLQTGQERARPGAWRRDIFGRIIWHKFKQWVIPWHLNKRYNRKRFFALPYVDHFLRLEREKRARIKARKENLERKKAKILLKK |
| 39S ribosomal protein L30, mitochondrial | Z | 115 | Homo Sapiens | KFTRSRIPEKVFQASPEDHEKYGGDPQNPHKLHIVTRIKSTRRRPYWEKDIIKMLGLEKAHTPQVHKNIPSVNAKLKVVKHLIRIKPLKLPQGLPAEENMSNTCLKSTGELVVQW |
| 39S ribosomal protein L32, mitochondrial | 0 | 108 | Homo Sapiens | AAPKNRRTIEVNRCRRRNPQKLIKVKNNIDVCPECGHLKQKHVLCAYCYEKVCKETAEIRRQIGKQEGGPFKAPTIETVVLYTGETPSEQDQGKRIIERDRKRPSWFT |
| 39S ribosomal protein L33, mitochondrial | 1 | 49 | Homo Sapiens | KNILVRMVSEAGTGFCFNTKRNRLREKLTLLHYDPVVKQRVLFVEKKKI |
| 39S ribosomal protein L34, mitochondrial | 2 | 45 | Homo Sapiens | ARGNEYQPSNIKRKNKHGWVRRLSTPAGVQVILRRMLKGRKSLSH |
| 39S ribosomal protein L35, mitochondrial | 3 | 95 | Homo Sapiens | LTYFSARKGKRKTVKAVIDRFLRLHCGLWVRRKAGYKKKLWKKTPARKKRLREFVFCNKTQSKLLDKMTTSFWKRRNWYVDDPYQKYHDRTNLKV |
| 39S ribosomal protein L37, mitochondrial | 5 | 392 | Homo Sapiens | YEWGVRSTRKSEPPPLDRVYEIPGLEPITFAGKMHFVPWLARPIFPPWDRGYKDPRFYRSPPLHEHPLYKDQACYIFHHRCRLLEGVKQALWLTKTKLIEGLPEKVLSLVDDPRNHIENQDECVLNVISHARLWQTTEEIPKRETYCPVIVDNLIQLCKSQILKHPSLARRICVQNSTFSATWNRESLLLQVRGSGGARLSTKDPLPTIASREEIEATKNHVLETFYPISPIIDLHECNIYDVKNDTGFQEGYPYPYPHTLYLLDKANLRPHRLQPDQLRAKMILFAFGSALAQARLLYGNDAKVLEQPVVVQSVGTDGRVFHFLVFQLNTTDLDCNEGVKNLAWVDSDQLLYQHFWCLPVIKKRVVVEPVGPVGFKPETFRKFLALYLHGA |
| 39S ribosomal protein L38, mitochondrial | 6 | 292 | Homo Sapiens | RRTPPLGPMPNSDIDLSNLERLEKYRSFDRYRRRAEQEAQAPHWWRTYREYFGPLDAVRAEWERTCGPYHKQRLAEYYGLYRDLFHGATFVPRVPLHVAYAVGEDDLMPVYCGNEVTPTEAAQAPEVTYEAELWTLLLTSLDGHLLEPDAEYLHWLLTNIPGNRVAEGQVTCPYLPPFPARGSGIHRLAFLLFKQDQPIDFSYQLAQRTFRTFDFYKKHQETMTPAGLSFFQCRWDDSVTYIFHQLLDMREPVFEFVRPPPYHPKQKRFPHRQPLRYLDRYRDSHEPTYGIY |
| 39S ribosomal protein L39, mitochondrial | 7 | 287 | Homo Sapiens | SPTELTEMRNDLFNKEKARQLSLTPRTEKIEVKHVGKTDPGTVFVMNKNISTPYSCAMHLSEWYCRKSILALVDGQPWDMYKPLTKSCEIKFLTFKDCDPGEVNKAYWRSCAMMMGCVIERAFKDEYMVNLVRAPEVPVISGAFCYDVVLDSKLDEWMPTKENLRSFTKDAHALIYKDLPFETLEVEAKVALEIFQHSKYKVDFIEEKASQNPERIVKLHRIGDFIDVSEGPLIPRTSICFQYEVSAVHNLQPTQPSLIRRFQGVSLPVHLRAHFTIWDKLLERSRK |
| 39S ribosomal protein L41, mitochondrial | 9 | 123 | Homo Sapiens | ADRMSKWTSKRGPRSFRGRKGRGAKGIGFLTSGWRFVQIKEMVPEFVVPDLTGFKLKPYVSYLAPESEETPLTAAQLFSEAVAPAIEKDFKDGTFDPDNLEKYGFEPTQEGKLFQLYPRNFLR |
| 39S ribosomal protein L48, mitochondrial | F | 17 | Homo Sapiens | YKTKPTHGIGKYKHLIK |
| 39S ribosomal protein L44, mitochondrial | C | 287 | Homo Sapiens | VKKGFRAAFRFQKELERQRLLRCPPPPVRRSEKPNWDYHAEIQAFGHRLQENFSLDLLKTAFVNSCYIKSEEAKRQQLGIEKEAVLLNLKSNQELSEQGTSFSQTCLTQFLEDEYPDMPTEGIKNLVDFLTGEEVVCHVARNLAVEQLTLSEEFPVPPAVLQQTFFAVIGALLQSSGPERTALFIRDFLITQMTGKELFEMWKIINPMGLLVEELKKRNVSAPESRLTRQSGGTTALPLYFVGLYCDKKLIAEGPGETVLVAEEEAARVALRKLYGFTENRRPWNYS |
| 39S ribosomal protein L49, mitochondrial | G | 129 | Homo Sapiens | FVESVDEYQFVERLLPATRIPDPPKHEHYPTPSGWQPPRDPPPNLPYFVRRSRMHNIPVYKDITHGNRQMTVIRKVEGDIWALQKDVEDFLSPLLGKTPVTQVNEVTGTLRIKGYFDQELKAWLLEKGF |
| 39S ribosomal protein L9, mitochondrial | H | 95 | Homo Sapiens | TVIVERWWKVPLAGEGRKPRLHRRHRVYKLVEDTKHRPKENLELILTQSVENVGVRGDLVSVKKSLGRNRLLPQGLAVYASPENKKLFEEEKLLR |
| 39S ribosomal protein L10, mitochondrial | I | 30 | Homo Sapiens | RRVMHFQRQKLMAVTEYIPPKPAIHPSCLP |
| 39S ribosomal protein L52, mitochondrial | J | 86 | Homo Sapiens | AGGQWRLQQGLAANPSGYGPLTELPDWSYADGRPAPPMKGQLRRKAERETFARRVVLLSQEMDAGLQAWQLRQQKLQEEQRKQENA |
| 39S ribosomal protein L36, mitochondrial | 4 | 37 | Homo Sapiens | FKNKTVLKKRCKDCYLVKRRGRWYVYCKTHPRHKQRQ |
| 39S ribosomal protein L13, mitochondrial | K | 177 | Homo Sapiens | SSFSRAPQQWATFARIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNTRHIAFSGNKWEQKVYSSHTGYPGGFRQVTAAQLHLRDPVAIVKLAIYGMLPKNLHRRTMMERLHLFPDEYIPEDILKNLVEELPQPRKIPKRLDEYTQEEIDAFPRLWTPPEDYRL |
| 39S ribosomal protein L14, mitochondrial | L | 115 | Homo Sapiens | AIQKMTRVRVVDNSALGNSPYHRAPRCIHVYKKNGVGKVGDQILLAIKGQKKKALIVGHCMPGPRMTPRFDSNNVVLIEDNGNPVGTRIKTPIPTSLRKREGEYSKVLAIAQNFV |
| 39S ribosomal protein L15, mitochondrial | M | 287 | Homo Sapiens | ARALDLLRGLPRVSLANLKPNPGSKKPERRPRGRRRGRKCGRGHKGERQRGTRPRLGFEGGQTPFYIRIPKYGFNEGHSFRRQYKPLSLNRLQYLIDLGRVDPSQPIDLTQLVNGRGVTIQPLKRDYGVQLVEEGADTFTAKVNIEVQLASELAIAAIEKNGGVVTTAFYDPRSLDIVCKPVPFFLRGQPIPKRMLPPEELVPYYTDAKNRGYLADPAKFPEARLELARKYGYILPDITKDELFKMLCTRKDPRQIFFGLAPGWVVNMADKKILKPTDENLLKYYTS |
| 39S ribosomal protein L16, mitochondrial | N | 201 | Homo Sapiens | RFIERAPLVPKVRREPKNLSDIRGPSTEATEFTEGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWRVPAPFKPITRKSVGHRMGGGKGAIDHYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVAHKLPFAAKAVSRGTLEKMRKDQEERERNNQNPWTFERIATANMLGIRKVLSPYDLTHKGKYWGKFYMPKRV |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 16S ribosomal RNA | a | 1256 | NA | GCUAAACCUAGCCCCAAACCCCCACCUUACUACCACAACUUAGCCAAACCAUUUACAUAAAGUAUAGGCGAUAGAAAUUGAUGGCGCAAUAGAUAUAGUACCGCAAGGGAAAGACAAGCAUAAUAUAGCAAGGACUAACCCCUAUACCUUCUGCAUAAUGAAUUAACUAGAAAUAACUUUGCAAGGAGAGCCAAAGCUAAGACCCCCGAAACCAGACGAGCUACCUAAGAACAGCUAAAAGAGCACACCCGUCUAUGUAGCAAAAUAGUGGGAAGAUUUAUAGGUAGAGGCGACAAACCUACCGAGCCUGGUGAUAGCUGGUUGUCCAAGAUAGAAUCUUAGUUCAACUUUAAAUUUGCCCACAGAACCAAAUCCCCUUGUAAAUUUAACUGUUAGUCCAAAGAGGAACAGCUCUUUGGACACUAGGAAAAAACCUUGUAGAGAGAGUAAAAAAUGAUCCCAAACAUAUAACUGAACUCCUCACACCCAAUUGGACCAAUCUAUCAUAUAGAAGAACUAAUGUUAGUAUAAGUAACAUGAAAACAUUCUCCUCCGCAUAAGCCUGCGUCAGAUCUGACAAUUAACAGCCCAAUAUCUACAAUCAACCAACAAGUUAUUACCCUCACUGUCAACCCAACCAGGCAUGCUCAUAAGGAAAGGUUAAAAAAAGUAAAAGGAACUCGGCAAAUCUUACCCCGCCUGUUUACCAAAAACAUCACCUCUAGCAUCACCAGUAUUAGAGGCACCGCCUCCUUAAAUAGGCUCCACGAGGGUUCAGCUGUCUCUUACUUUUAACCAGUGAAAUUGACCUGCCCGUGAGGCGGGCAUAACACAGCAAGACGAAGACCCUAUGGAGCUUUAAUUUAUUAAUGCAAAACCUGCAUUAAAAAUUUCGGUUGGGGCGACCUCGGAGCAGAACCCAACCUCCGAGGCUAAGACUUCACCAGUCAAAGCGAAGAUCCAAUAACUUGACCAACGGAACAAGUUACCCUAGGGCAAUCCUAUUCUAGAGUCCAUAUCAACAAUAGGGUUUACUGGAUCAGGACAUCCCGAUGGUGCAGCCGCUAUUAAAGGUUCGUUUGUUCAACGAUUAAAGUCCUCGUGAUCUGAGUUCAGACCGGAGUAAUCCAGGUCGGUUUCUAUCUACUUUAUUCCUCCCUGUACGAAAGGACAAGAGAAAUAAGGCCUACUUCACAAAGCGCCUUCUAAAUGAUAUCAUCUCAACUUAAUACCCACACCCACCCAAGAACAGGGUU |
| mitochondrial tRNAVal | b | 61 | NA | AGAGUGUAGCUUAACACAAAGCACCCAACUUACACUUAGGAGAUUUCAAUUGACGCUCUGA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2021-12-10 Deposition Author(s): Dent, K.C. , Minczuk, M. , Pellegrino, S. , Rebelo-Guiomar, P. , Warren, A.J.