7QD4
Cryo-em structure of tn4430 tnpa transposase from tn3 family in complex with 100 bp long transposon end dna
PDB DOI: 10.2210/pdb7qd4/pdb
Classification: RECOMBINATION Organism(s): Bacillus Thuringiensis , Synthetic Construct
Deposited: 2021-11-26 Deposition Author(s): Aryanpour, N. , Efremov, R.G. , Hallet, B.F. , Oger, C.A. , Shkumatov, A.V.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.9 Å
Cryo-em structure of tn4430 tnpa transposase from tn3 family in complex with 100 bp long transposon end dna
Aryanpour, N. , Efremov, R.G. , Hallet, B.F. , Oger, C.A. , Shkumatov, A.V.
Primary Citation of Related Structures: 7QD4
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Transposase for transposon Tn4430 | A | 1014 | Bacillus Thuringiensis , Synthetic Construct | MGVKQLLSEAQRNELMDLSRLTEWDLVTFHTFSKHDLHLILKHRRGYNRLGFALQLVLIRYPGWSLTEYKDIPQYVVAYVASQLQIPPEEFLVYAKRGNTLWEHLGEIRTEYGYQNFSSEYKETLLQFLVQQAMDNNNTLYLIEITISTLRKMKVILPAMYVIEDIVWEAKQQADQKVYSILHDGLVQEQKDQLDALLLPTINGKSPLAWLKDVPAQPSPESFLKVIDRLQFVQKIGLTIDTTKINTNRLRQLARLGSKYEPYAFRRFNEVKRYSMLVSFLLEITQDLIDYAIEIHDRLMMNLQTKGKKEQDEIQQANGKKLNEKILQFITVCGTLIEAKETGKDAFAALDEVMSWNEMVESVEEAKQLSRPLNYDYLDLLNTRYSYVRRYAPTLLRSLHFRATKSGEPVLQALDTIHELNETGKRKVPHGAPLHFVSNRWQKHVYDDDGNINRHYYELAALTELRNHIRSGDIFVSGSRHHKAFDDYLIPYDEWNEVSNIPNGLTAPLKAEDYITDRINRLNEHLEWLSKNSEKLEGVDISQGKLHVERLDRGTPEEAKAFSKLLHSMLPRIKLTDLLIEVASWTGFHDQFIHASTNQSPDQEEQNIVLATLMAMGTNIGLTKMAEATPGISYRQMANASQWRMYDDAMVRAQSILVNFQKEQKLSSYWGDGTTSSSDGMRLSIAVRSLHADSNPHYGTGKGGTIYRFVSDQLSAYHVKVITTNARDALHVLDGLLHHETDLKIEEHYTDTAGYTDQVFALTHLLGFRFAPRIRDLADTKLFSIPGGEEYENVQALLKGKINVKLIKENYEDIRRLAYSVQTGKVSSALIMGKLGSYARQNKLATALGEMGRIEKTLFTLDYISNKAVRRRVQKGLNKGEAINALARIIFFGQRGEFRERALQDQLQRARALNIIINAISVWNTVYMEKAVEELKARGEFREDLMPYAWPLGWEHINFLGEYKFEGLHDTGQMNLRPLRIKEPFYSPIRSFLEQKLISEEDLNSAVDHHHHHH |
| Transposase for transposon Tn4430 | D | 1014 | Bacillus Thuringiensis , Synthetic Construct | MGVKQLLSEAQRNELMDLSRLTEWDLVTFHTFSKHDLHLILKHRRGYNRLGFALQLVLIRYPGWSLTEYKDIPQYVVAYVASQLQIPPEEFLVYAKRGNTLWEHLGEIRTEYGYQNFSSEYKETLLQFLVQQAMDNNNTLYLIEITISTLRKMKVILPAMYVIEDIVWEAKQQADQKVYSILHDGLVQEQKDQLDALLLPTINGKSPLAWLKDVPAQPSPESFLKVIDRLQFVQKIGLTIDTTKINTNRLRQLARLGSKYEPYAFRRFNEVKRYSMLVSFLLEITQDLIDYAIEIHDRLMMNLQTKGKKEQDEIQQANGKKLNEKILQFITVCGTLIEAKETGKDAFAALDEVMSWNEMVESVEEAKQLSRPLNYDYLDLLNTRYSYVRRYAPTLLRSLHFRATKSGEPVLQALDTIHELNETGKRKVPHGAPLHFVSNRWQKHVYDDDGNINRHYYELAALTELRNHIRSGDIFVSGSRHHKAFDDYLIPYDEWNEVSNIPNGLTAPLKAEDYITDRINRLNEHLEWLSKNSEKLEGVDISQGKLHVERLDRGTPEEAKAFSKLLHSMLPRIKLTDLLIEVASWTGFHDQFIHASTNQSPDQEEQNIVLATLMAMGTNIGLTKMAEATPGISYRQMANASQWRMYDDAMVRAQSILVNFQKEQKLSSYWGDGTTSSSDGMRLSIAVRSLHADSNPHYGTGKGGTIYRFVSDQLSAYHVKVITTNARDALHVLDGLLHHETDLKIEEHYTDTAGYTDQVFALTHLLGFRFAPRIRDLADTKLFSIPGGEEYENVQALLKGKINVKLIKENYEDIRRLAYSVQTGKVSSALIMGKLGSYARQNKLATALGEMGRIEKTLFTLDYISNKAVRRRVQKGLNKGEAINALARIIFFGQRGEFRERALQDQLQRARALNIIINAISVWNTVYMEKAVEELKARGEFREDLMPYAWPLGWEHINFLGEYKFEGLHDTGQMNLRPLRIKEPFYSPIRSFLEQKLISEEDLNSAVDHHHHHH |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| IR100 DNA substrate, none transferred strand | b | 100 | NA | CGGGGATCCTCTAGCTCGAGATGCATCCATGGGGGTACCGCCAGCATTTCGGAAAAAAACCACGCTAAGATCCTCTAGGCTAGCGCGCAAAATAATACAA |
| IR100 DNA substrate, none transferred strand | e | 100 | NA | CGGGGATCCTCTAGCTCGAGATGCATCCATGGGGGTACCGCCAGCATTTCGGAAAAAAACCACGCTAAGATCCTCTAGGCTAGCGCGCAAAATAATACAA |
| IR100 DNA substrate, transferred strand | c | 100 | NA | TTGTATTATTTTGCGCGCTAGCCTAGAGGATCTTAGCGTGGTTTTTTTCCGAAATGCTGGCGGTACCCCCATGGATGCATCTCGAGCTAGAGGATCCCCG |
| IR100 DNA substrate, transferred strand | f | 100 | NA | TTGTATTATTTTGCGCGCTAGCCTAGAGGATCTTAGCGTGGTTTTTTTCCGAAATGCTGGCGGTACCCCCATGGATGCATCTCGAGCTAGAGGATCCCCG |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2021-11-26 Deposition Author(s): Aryanpour, N. , Efremov, R.G. , Hallet, B.F. , Oger, C.A. , Shkumatov, A.V.