7Q3O
Structure of cdx1 bound to hydroxymethylated dna
PDB DOI: 10.2210/pdb7q3o/pdb
Classification: TRANSCRIPTION Organism(s): Homo Sapiens , Synthetic Construct
Deposited: 2021-10-28 Deposition Author(s): Morgunova, E. , Popov, A. , Taipale, J. , Yin, Y.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.78 Å
Structure of cdx1 bound to hydroxymethylated dna
Morgunova, E. , Popov, A. , Taipale, J. , Yin, Y.
Primary Citation of Related Structures: 7Q3O
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| hydroxymethylated DNA (18-MER) | a | 18 | NA | TTGTGTTTTATGACGTCC |
| hydroxymethylated DNA (18-MER) | b | 18 | NA | TTGTGTTTTATGACGTCC |
| hydroxymethylated DNA (18-MER) | d | 18 | NA | TTGTGTTTTATGACGTCC |
| hydroxymethylated DNA (18-MER) | f | 18 | NA | TTGTGTTTTATGACGTCC |
| hydroxymethylated DNA (18-MER) | h | 18 | NA | GGACGTXATAAAACACAA |
| hydroxymethylated DNA (18-MER) | i | 18 | NA | GGACGTXATAAAACACAA |
| hydroxymethylated DNA (18-MER) | j | 18 | NA | GGACGTXATAAAACACAA |
| hydroxymethylated DNA (18-MER) | l | 18 | NA | GGACGTXATAAAACACAA |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Homeobox protein CDX-1 | K | 65 | Homo Sapiens , Synthetic Construct | TRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKK |
| Homeobox protein CDX-1 | C | 65 | Homo Sapiens , Synthetic Construct | TRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKK |
| Homeobox protein CDX-1 | E | 65 | Homo Sapiens , Synthetic Construct | TRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKK |
| Homeobox protein CDX-1 | G | 65 | Homo Sapiens , Synthetic Construct | TRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKK |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2021-10-28 Deposition Author(s): Morgunova, E. , Popov, A. , Taipale, J. , Yin, Y.