7PI3
Pfcyrpa bound to fab fragments from monoclonal antibodies cy.003, cy.004 and cy.007
PDB DOI: 10.2210/pdb7pi3/pdb
Classification: IMMUNE SYSTEM Organism(s): Gallus Gallus , Plasmodium Falciparum 3D7
Deposited: 2021-08-19 Deposition Author(s): Higgins, M.K. , Ragotte, R.J.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 3.269 Å
Pfcyrpa bound to fab fragments from monoclonal antibodies cy.003, cy.004 and cy.007
Primary Citation of Related Structures: 7PI3
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Monoclonal antibody Cy.004 heavy chain | A | 321 | Gallus Gallus , Plasmodium Falciparum 3D7 | AVTLDESGGGLQTPGGALSLVCKASGFDFSSYAMGWVRQAPGKGLEYVAGIRNDGSFTLYTPAVKGRATISRDNGQSTVRLQLNNLRAEDTATYFCTKSADDGGHYSDFSGEIDAWGHGTEVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQD |
| Cysteine-rich protective antigen | H | 343 | Gallus Gallus , Plasmodium Falciparum 3D7 | DSRHVFIRTELSFIKNNVPCIRDMFFIYKRELYNICLDDLKGEEDETHIYVQKKVKDSWITLNDLFKETDLTGRPHIFAYVDVEEIIILLCEDEEFSNRKKDMTCHRFYSNDGKEYNNAEITISDYILKDKLLSSYVSLPLKIENREYFLICGVSPYKFKDDNKKDDILCMASHDKGETWGTKIVIKYDNYKLGVQYFFLRPYISKNDLSFHFYVGDNINNVKNVNFIECTHEKDLEFVCSNRDFLKDNKVLQDVSTLNDEYIVSYGNDNNFAECYIFFNNENSILIKPEKYGNTAAGCYGGTFVKIDENRALFIYSSSQGIYNIHTIYYANYEGGGGSEPEA |
| Cysteine-rich protective antigen | O | 343 | Gallus Gallus , Plasmodium Falciparum 3D7 | DSRHVFIRTELSFIKNNVPCIRDMFFIYKRELYNICLDDLKGEEDETHIYVQKKVKDSWITLNDLFKETDLTGRPHIFAYVDVEEIIILLCEDEEFSNRKKDMTCHRFYSNDGKEYNNAEITISDYILKDKLLSSYVSLPLKIENREYFLICGVSPYKFKDDNKKDDILCMASHDKGETWGTKIVIKYDNYKLGVQYFFLRPYISKNDLSFHFYVGDNINNVKNVNFIECTHEKDLEFVCSNRDFLKDNKVLQDVSTLNDEYIVSYGNDNNFAECYIFFNNENSILIKPEKYGNTAAGCYGGTFVKIDENRALFIYSSSQGIYNIHTIYYANYEGGGGSEPEA |
| Cysteine-rich protective antigen | V | 343 | Gallus Gallus , Plasmodium Falciparum 3D7 | DSRHVFIRTELSFIKNNVPCIRDMFFIYKRELYNICLDDLKGEEDETHIYVQKKVKDSWITLNDLFKETDLTGRPHIFAYVDVEEIIILLCEDEEFSNRKKDMTCHRFYSNDGKEYNNAEITISDYILKDKLLSSYVSLPLKIENREYFLICGVSPYKFKDDNKKDDILCMASHDKGETWGTKIVIKYDNYKLGVQYFFLRPYISKNDLSFHFYVGDNINNVKNVNFIECTHEKDLEFVCSNRDFLKDNKVLQDVSTLNDEYIVSYGNDNNFAECYIFFNNENSILIKPEKYGNTAAGCYGGTFVKIDENRALFIYSSSQGIYNIHTIYYANYEGGGGSEPEA |
| Monoclonal antibody Cy.004 light chain | B | 209 | Gallus Gallus , Plasmodium Falciparum 3D7 | ALTQPSSVSANPGETVKITCSGSTYNYGWYQQKSPGSAPVTVIYYNDKRPSDIPSRFSGSKSGSTGTLTITGVQAEDEAVYYCGNSDSRNVAFGAGTTLTVLRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
| Monoclonal antibody Cy.003 heavy chain | I | 230 | Gallus Gallus , Plasmodium Falciparum 3D7 | VTLDESGGGLQTPGGALSLVCKGSGFFSFSSYTMQWVRQAPGKGLEWVASISSGGGTNYGAAVKGRATISRDNGQSTLRLQLNNLRAEDTGTYYCAKHGVNGCDWSYSVGCVDAWGHGTEVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK |
| Monoclonal antibody Cy.003 heavy chain | P | 230 | Gallus Gallus , Plasmodium Falciparum 3D7 | VTLDESGGGLQTPGGALSLVCKGSGFFSFSSYTMQWVRQAPGKGLEWVASISSGGGTNYGAAVKGRATISRDNGQSTLRLQLNNLRAEDTGTYYCAKHGVNGCDWSYSVGCVDAWGHGTEVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK |
| Monoclonal antibody Cy.003 heavy chain | W | 230 | Gallus Gallus , Plasmodium Falciparum 3D7 | VTLDESGGGLQTPGGALSLVCKGSGFFSFSSYTMQWVRQAPGKGLEWVASISSGGGTNYGAAVKGRATISRDNGQSTLRLQLNNLRAEDTGTYYCAKHGVNGCDWSYSVGCVDAWGHGTEVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK |
| Monoclonal antibody Cy.003 light chain | C | 210 | Gallus Gallus , Plasmodium Falciparum 3D7 | ALTQPSSVSANPGETVKITCSGGSSSYYGWYQQKSPGSAPVTLIYNNQKRPSDIPSRFSGSKSGSTGTLTITGVQAEDEAVYFCGSRDNSGGIFGAGTTLTVLRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
| Monoclonal antibody Cy.003 light chain | J | 210 | Gallus Gallus , Plasmodium Falciparum 3D7 | ALTQPSSVSANPGETVKITCSGGSSSYYGWYQQKSPGSAPVTLIYNNQKRPSDIPSRFSGSKSGSTGTLTITGVQAEDEAVYFCGSRDNSGGIFGAGTTLTVLRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
| Monoclonal antibody Cy.003 light chain | Q | 210 | Gallus Gallus , Plasmodium Falciparum 3D7 | ALTQPSSVSANPGETVKITCSGGSSSYYGWYQQKSPGSAPVTLIYNNQKRPSDIPSRFSGSKSGSTGTLTITGVQAEDEAVYFCGSRDNSGGIFGAGTTLTVLRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
| Monoclonal antibody Cy.003 light chain | X | 210 | Gallus Gallus , Plasmodium Falciparum 3D7 | ALTQPSSVSANPGETVKITCSGGSSSYYGWYQQKSPGSAPVTLIYNNQKRPSDIPSRFSGSKSGSTGTLTITGVQAEDEAVYFCGSRDNSGGIFGAGTTLTVLRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
| Monoclonal antibody Cy.007 heavy chain | D | 230 | Gallus Gallus , Plasmodium Falciparum 3D7 | AVTLDESGGGLQTPGGTLSLVCKGSGFTFSSYEMQWVRQAPGKGLEWVADICIGGSYTGYGPAVKGRATISRDDGQSTVRLQLNNLRAEDTGTYYCAKTARSDYCITGLDDIDAWGHGTEVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK |
| Monoclonal antibody Cy.007 heavy chain | K | 230 | Gallus Gallus , Plasmodium Falciparum 3D7 | AVTLDESGGGLQTPGGTLSLVCKGSGFTFSSYEMQWVRQAPGKGLEWVADICIGGSYTGYGPAVKGRATISRDDGQSTVRLQLNNLRAEDTGTYYCAKTARSDYCITGLDDIDAWGHGTEVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK |
| Monoclonal antibody Cy.007 heavy chain | R | 230 | Gallus Gallus , Plasmodium Falciparum 3D7 | AVTLDESGGGLQTPGGTLSLVCKGSGFTFSSYEMQWVRQAPGKGLEWVADICIGGSYTGYGPAVKGRATISRDDGQSTVRLQLNNLRAEDTGTYYCAKTARSDYCITGLDDIDAWGHGTEVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK |
| Monoclonal antibody Cy.007 heavy chain | Y | 230 | Gallus Gallus , Plasmodium Falciparum 3D7 | AVTLDESGGGLQTPGGTLSLVCKGSGFTFSSYEMQWVRQAPGKGLEWVADICIGGSYTGYGPAVKGRATISRDDGQSTVRLQLNNLRAEDTGTYYCAKTARSDYCITGLDDIDAWGHGTEVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK |
| Monoclonal antibody Cy.007 light chain | E | 209 | Gallus Gallus , Plasmodium Falciparum 3D7 | ALTQPSSVSANPGETVKITCSGGSSDYGWYQQKSPGSAPVTVIYENNKRPSDIPSRFSGSKFGSTHTLTITGVQADDEAVYFCGSRDTNNGAFGAGTTLTVLRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
| Monoclonal antibody Cy.007 light chain | L | 209 | Gallus Gallus , Plasmodium Falciparum 3D7 | ALTQPSSVSANPGETVKITCSGGSSDYGWYQQKSPGSAPVTVIYENNKRPSDIPSRFSGSKFGSTHTLTITGVQADDEAVYFCGSRDTNNGAFGAGTTLTVLRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
| Monoclonal antibody Cy.007 light chain | S | 209 | Gallus Gallus , Plasmodium Falciparum 3D7 | ALTQPSSVSANPGETVKITCSGGSSDYGWYQQKSPGSAPVTVIYENNKRPSDIPSRFSGSKFGSTHTLTITGVQADDEAVYFCGSRDTNNGAFGAGTTLTVLRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
| Monoclonal antibody Cy.007 light chain | Z | 209 | Gallus Gallus , Plasmodium Falciparum 3D7 | ALTQPSSVSANPGETVKITCSGGSSDYGWYQQKSPGSAPVTVIYENNKRPSDIPSRFSGSKFGSTHTLTITGVQADDEAVYFCGSRDTNNGAFGAGTTLTVLRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
| Monoclonal antibody Cy.004 heavy chain | F | 321 | Gallus Gallus , Plasmodium Falciparum 3D7 | AVTLDESGGGLQTPGGALSLVCKASGFDFSSYAMGWVRQAPGKGLEYVAGIRNDGSFTLYTPAVKGRATISRDNGQSTVRLQLNNLRAEDTATYFCTKSADDGGHYSDFSGEIDAWGHGTEVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQD |
| Monoclonal antibody Cy.004 heavy chain | M | 321 | Gallus Gallus , Plasmodium Falciparum 3D7 | AVTLDESGGGLQTPGGALSLVCKASGFDFSSYAMGWVRQAPGKGLEYVAGIRNDGSFTLYTPAVKGRATISRDNGQSTVRLQLNNLRAEDTATYFCTKSADDGGHYSDFSGEIDAWGHGTEVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQD |
| Monoclonal antibody Cy.004 heavy chain | T | 321 | Gallus Gallus , Plasmodium Falciparum 3D7 | AVTLDESGGGLQTPGGALSLVCKASGFDFSSYAMGWVRQAPGKGLEYVAGIRNDGSFTLYTPAVKGRATISRDNGQSTVRLQLNNLRAEDTATYFCTKSADDGGHYSDFSGEIDAWGHGTEVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQD |
| Monoclonal antibody Cy.004 light chain | G | 209 | Gallus Gallus , Plasmodium Falciparum 3D7 | ALTQPSSVSANPGETVKITCSGSTYNYGWYQQKSPGSAPVTVIYYNDKRPSDIPSRFSGSKSGSTGTLTITGVQAEDEAVYYCGNSDSRNVAFGAGTTLTVLRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
| Monoclonal antibody Cy.004 light chain | N | 209 | Gallus Gallus , Plasmodium Falciparum 3D7 | ALTQPSSVSANPGETVKITCSGSTYNYGWYQQKSPGSAPVTVIYYNDKRPSDIPSRFSGSKSGSTGTLTITGVQAEDEAVYYCGNSDSRNVAFGAGTTLTVLRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
| Monoclonal antibody Cy.004 light chain | U | 209 | Gallus Gallus , Plasmodium Falciparum 3D7 | ALTQPSSVSANPGETVKITCSGSTYNYGWYQQKSPGSAPVTVIYYNDKRPSDIPSRFSGSKSGSTGTLTITGVQAEDEAVYYCGNSDSRNVAFGAGTTLTVLRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2021-08-19 Deposition Author(s): Higgins, M.K. , Ragotte, R.J.