Jc polyomavirus vp1 in complex with scfv 29b1
PDB DOI: 10.2210/pdb7paa/pdb
Classification: VIRAL PROTEIN Organism(s): Homo Sapiens , Jc Polyomavirus
Deposited: 2021-07-29 Deposition Author(s): Freytag, J. , Harprecht, C. , Stehle, T. , Stroeh, L.J.
Jc polyomavirus vp1 in complex with scfv 29b1
Freytag, J. , Harprecht, C. , Stehle, T. , Stroeh, L.J.
Primary Citation of Related Structures: 7PAA
Proteins | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
scFv 29B1 | ZZZ | 252 | Homo Sapiens , Jc Polyomavirus | GSYVLTQPPSVSVAPGKTARITCGGNNIGSRSVHWYQHKPGQAPVMIISYDMNRPSGIPERVSGSNYGNTATLTISRVEAGDEADYYCQVWDSRSDHPYVFGTGTRVTVLGSTSGSGKPGSGEGSTKGEVQLVESGGGLVKPGGSLRLSCAASGITFQYYAMNWVRQAPGKGLEWVSSIGGRGDTTYYTDSVKGRFTISRDNSKSTLYLQMNSLRAEDTAVYYCAKEPFDSSGDHRGVFDYWGQGTLVTVSS |
scFv 29B1 | KKK | 252 | Homo Sapiens , Jc Polyomavirus | GSYVLTQPPSVSVAPGKTARITCGGNNIGSRSVHWYQHKPGQAPVMIISYDMNRPSGIPERVSGSNYGNTATLTISRVEAGDEADYYCQVWDSRSDHPYVFGTGTRVTVLGSTSGSGKPGSGEGSTKGEVQLVESGGGLVKPGGSLRLSCAASGITFQYYAMNWVRQAPGKGLEWVSSIGGRGDTTYYTDSVKGRFTISRDNSKSTLYLQMNSLRAEDTAVYYCAKEPFDSSGDHRGVFDYWGQGTLVTVSS |
Major capsid protein VP1 | AAA | 272 | Homo Sapiens , Jc Polyomavirus | GSHMGGVEVLEVKTGVDSITEVECFLTPEMGDPDEHLRGFSKSISISDTFESDSPNRDMLPCYSVARIPLPNLNEDLTCGNILMWEAVTLKTEVIGVTSLMNVHSNGQATHDNGAGKPVQGTSFHFFSVGGEALELQGVLFNYRTKYPDGTIFPKNATVQSQVMNTEHKAYLDKNKAYPVECWVPDPTRNENTRYFGTLTGGENVPPVLHITNTATTVLLDEFGVGPLCKGDNLYLSAVDVCGMFTNRSGSQQWRGLSRYFKVQLRKRRVKN |
Major capsid protein VP1 | BBB | 272 | Homo Sapiens , Jc Polyomavirus | GSHMGGVEVLEVKTGVDSITEVECFLTPEMGDPDEHLRGFSKSISISDTFESDSPNRDMLPCYSVARIPLPNLNEDLTCGNILMWEAVTLKTEVIGVTSLMNVHSNGQATHDNGAGKPVQGTSFHFFSVGGEALELQGVLFNYRTKYPDGTIFPKNATVQSQVMNTEHKAYLDKNKAYPVECWVPDPTRNENTRYFGTLTGGENVPPVLHITNTATTVLLDEFGVGPLCKGDNLYLSAVDVCGMFTNRSGSQQWRGLSRYFKVQLRKRRVKN |
Major capsid protein VP1 | CCC | 272 | Homo Sapiens , Jc Polyomavirus | GSHMGGVEVLEVKTGVDSITEVECFLTPEMGDPDEHLRGFSKSISISDTFESDSPNRDMLPCYSVARIPLPNLNEDLTCGNILMWEAVTLKTEVIGVTSLMNVHSNGQATHDNGAGKPVQGTSFHFFSVGGEALELQGVLFNYRTKYPDGTIFPKNATVQSQVMNTEHKAYLDKNKAYPVECWVPDPTRNENTRYFGTLTGGENVPPVLHITNTATTVLLDEFGVGPLCKGDNLYLSAVDVCGMFTNRSGSQQWRGLSRYFKVQLRKRRVKN |
Major capsid protein VP1 | DDD | 272 | Homo Sapiens , Jc Polyomavirus | GSHMGGVEVLEVKTGVDSITEVECFLTPEMGDPDEHLRGFSKSISISDTFESDSPNRDMLPCYSVARIPLPNLNEDLTCGNILMWEAVTLKTEVIGVTSLMNVHSNGQATHDNGAGKPVQGTSFHFFSVGGEALELQGVLFNYRTKYPDGTIFPKNATVQSQVMNTEHKAYLDKNKAYPVECWVPDPTRNENTRYFGTLTGGENVPPVLHITNTATTVLLDEFGVGPLCKGDNLYLSAVDVCGMFTNRSGSQQWRGLSRYFKVQLRKRRVKN |
Major capsid protein VP1 | EEE | 272 | Homo Sapiens , Jc Polyomavirus | GSHMGGVEVLEVKTGVDSITEVECFLTPEMGDPDEHLRGFSKSISISDTFESDSPNRDMLPCYSVARIPLPNLNEDLTCGNILMWEAVTLKTEVIGVTSLMNVHSNGQATHDNGAGKPVQGTSFHFFSVGGEALELQGVLFNYRTKYPDGTIFPKNATVQSQVMNTEHKAYLDKNKAYPVECWVPDPTRNENTRYFGTLTGGENVPPVLHITNTATTVLLDEFGVGPLCKGDNLYLSAVDVCGMFTNRSGSQQWRGLSRYFKVQLRKRRVKN |
scFv 29B1 | WWW | 252 | Homo Sapiens , Jc Polyomavirus | GSYVLTQPPSVSVAPGKTARITCGGNNIGSRSVHWYQHKPGQAPVMIISYDMNRPSGIPERVSGSNYGNTATLTISRVEAGDEADYYCQVWDSRSDHPYVFGTGTRVTVLGSTSGSGKPGSGEGSTKGEVQLVESGGGLVKPGGSLRLSCAASGITFQYYAMNWVRQAPGKGLEWVSSIGGRGDTTYYTDSVKGRFTISRDNSKSTLYLQMNSLRAEDTAVYYCAKEPFDSSGDHRGVFDYWGQGTLVTVSS |
scFv 29B1 | XXX | 252 | Homo Sapiens , Jc Polyomavirus | GSYVLTQPPSVSVAPGKTARITCGGNNIGSRSVHWYQHKPGQAPVMIISYDMNRPSGIPERVSGSNYGNTATLTISRVEAGDEADYYCQVWDSRSDHPYVFGTGTRVTVLGSTSGSGKPGSGEGSTKGEVQLVESGGGLVKPGGSLRLSCAASGITFQYYAMNWVRQAPGKGLEWVSSIGGRGDTTYYTDSVKGRFTISRDNSKSTLYLQMNSLRAEDTAVYYCAKEPFDSSGDHRGVFDYWGQGTLVTVSS |
scFv 29B1 | YYY | 252 | Homo Sapiens , Jc Polyomavirus | GSYVLTQPPSVSVAPGKTARITCGGNNIGSRSVHWYQHKPGQAPVMIISYDMNRPSGIPERVSGSNYGNTATLTISRVEAGDEADYYCQVWDSRSDHPYVFGTGTRVTVLGSTSGSGKPGSGEGSTKGEVQLVESGGGLVKPGGSLRLSCAASGITFQYYAMNWVRQAPGKGLEWVSSIGGRGDTTYYTDSVKGRFTISRDNSKSTLYLQMNSLRAEDTAVYYCAKEPFDSSGDHRGVFDYWGQGTLVTVSS |
Major capsid protein VP1 | FFF | 272 | Homo Sapiens , Jc Polyomavirus | GSHMGGVEVLEVKTGVDSITEVECFLTPEMGDPDEHLRGFSKSISISDTFESDSPNRDMLPCYSVARIPLPNLNEDLTCGNILMWEAVTLKTEVIGVTSLMNVHSNGQATHDNGAGKPVQGTSFHFFSVGGEALELQGVLFNYRTKYPDGTIFPKNATVQSQVMNTEHKAYLDKNKAYPVECWVPDPTRNENTRYFGTLTGGENVPPVLHITNTATTVLLDEFGVGPLCKGDNLYLSAVDVCGMFTNRSGSQQWRGLSRYFKVQLRKRRVKN |
Major capsid protein VP1 | GGG | 272 | Homo Sapiens , Jc Polyomavirus | GSHMGGVEVLEVKTGVDSITEVECFLTPEMGDPDEHLRGFSKSISISDTFESDSPNRDMLPCYSVARIPLPNLNEDLTCGNILMWEAVTLKTEVIGVTSLMNVHSNGQATHDNGAGKPVQGTSFHFFSVGGEALELQGVLFNYRTKYPDGTIFPKNATVQSQVMNTEHKAYLDKNKAYPVECWVPDPTRNENTRYFGTLTGGENVPPVLHITNTATTVLLDEFGVGPLCKGDNLYLSAVDVCGMFTNRSGSQQWRGLSRYFKVQLRKRRVKN |
Major capsid protein VP1 | HHH | 272 | Homo Sapiens , Jc Polyomavirus | GSHMGGVEVLEVKTGVDSITEVECFLTPEMGDPDEHLRGFSKSISISDTFESDSPNRDMLPCYSVARIPLPNLNEDLTCGNILMWEAVTLKTEVIGVTSLMNVHSNGQATHDNGAGKPVQGTSFHFFSVGGEALELQGVLFNYRTKYPDGTIFPKNATVQSQVMNTEHKAYLDKNKAYPVECWVPDPTRNENTRYFGTLTGGENVPPVLHITNTATTVLLDEFGVGPLCKGDNLYLSAVDVCGMFTNRSGSQQWRGLSRYFKVQLRKRRVKN |
Major capsid protein VP1 | III | 272 | Homo Sapiens , Jc Polyomavirus | GSHMGGVEVLEVKTGVDSITEVECFLTPEMGDPDEHLRGFSKSISISDTFESDSPNRDMLPCYSVARIPLPNLNEDLTCGNILMWEAVTLKTEVIGVTSLMNVHSNGQATHDNGAGKPVQGTSFHFFSVGGEALELQGVLFNYRTKYPDGTIFPKNATVQSQVMNTEHKAYLDKNKAYPVECWVPDPTRNENTRYFGTLTGGENVPPVLHITNTATTVLLDEFGVGPLCKGDNLYLSAVDVCGMFTNRSGSQQWRGLSRYFKVQLRKRRVKN |
Major capsid protein VP1 | JJJ | 272 | Homo Sapiens , Jc Polyomavirus | GSHMGGVEVLEVKTGVDSITEVECFLTPEMGDPDEHLRGFSKSISISDTFESDSPNRDMLPCYSVARIPLPNLNEDLTCGNILMWEAVTLKTEVIGVTSLMNVHSNGQATHDNGAGKPVQGTSFHFFSVGGEALELQGVLFNYRTKYPDGTIFPKNATVQSQVMNTEHKAYLDKNKAYPVECWVPDPTRNENTRYFGTLTGGENVPPVLHITNTATTVLLDEFGVGPLCKGDNLYLSAVDVCGMFTNRSGSQQWRGLSRYFKVQLRKRRVKN |
Method: X-RAY DIFFRACTION
Deposited Date: 2021-07-29 Deposition Author(s): Freytag, J. , Harprecht, C. , Stehle, T. , Stroeh, L.J.