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FASTA Sequence PDB Format mmCIF Format
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7OZS

Structure of the hexameric 5s rnp from c. thermophilum

PDB DOI: 10.2210/pdb7ozs/pdb

Classification: RNA BINDING PROTEIN
Organism(s): Rubrivivax Gelatinosus Il144 , Ustilago Maydis (Strain 521 / Fgsc 9021)

Deposited: 2021-06-28
Deposition Author(s): Ameismeier, M. , Bassler, J. , Beck, M. , Beckmann, R. , Buschauer, R. , Castillo, N. , Flemming, D. , Hammaren, H.M. , Hurt, E. , Thoms, M.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.5 Å

7ozs
Literature

Structure of the hexameric 5s rnp from c. thermophilum

Ameismeier, M. , Bassler, J. , Beck, M. , Beckmann, R. , Buschauer, R. , Castillo, N. , Flemming, D. , Hammaren, H.M. , Hurt, E. , Thoms, M.

Primary Citation of Related Structures: 7OZS


Proteins
Molecule Chains Sequence Length Organism Sequence
Putative ribosomal protein B 173 Rubrivivax Gelatinosus Il144 , Ustilago Maydis (Strain 521 / Fgsc 9021) MSSEKAQNPMRELRIQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRQFGIRRNEKIAVHVTVRGPKAEEILERGLKVKEYELRRRNFSETGNFGFGISEHIDLGIKYDPSIGIYGMDFYCCMTRPGERVAKRRRCKSRIGASHRITREETIRWFKQRFDGIVR
60S ribosomal protein l5-like protein A 304 Rubrivivax Gelatinosus Il144 , Ustilago Maydis (Strain 521 / Fgsc 9021) MAFHKLVKNSAYYSRFQTKFKRRRQGKTDYYARKRLITQAKNKYNAPKYRLVVRFTNRDIITQMVTSEINGDKIFAAAYSHELRAYGINHGLTNWAAAYATGLLLARRVLAKLGLDKTFTGVEEPNGEYTLTEAAETEDGERRPFKAILDVGLARTSTGARVFGVMKGASDGGIFIPHSENRFPGYDIETEELDTEVLKKYIYGGHVAEYMETLADDDEERYKSQFVKYIEDDVEADSLEELYAEAHKQIRADPFRKYVSDAPKKSKEEWKAESLKYKKAKLSREERKARVEAKIKQLLAEQDE
Ribosome biogenesis regulatory protein D 202 Rubrivivax Gelatinosus Il144 , Ustilago Maydis (Strain 521 / Fgsc 9021) MSTDTSKPARLPVTVEKPTPYTFDLGLLLANDPNPVNVPKTTDTQVLEQHLASVARDGAQVLINQLLTTTTITATKDGVLLTLPPPTTPLPREKPVPQPKPETKWQAFARRRGIKPKTREQRRNLQYNPTTGQWERKWGYKGANKRGETDPIIEVSAAKEAMRPEGTSVRGDKRREIRARVKKNQKQMLRNQRIAAEKMGKK
Ribosome production factor 2 homolog C 350 Rubrivivax Gelatinosus Il144 , Ustilago Maydis (Strain 521 / Fgsc 9021) MLRQIKPRNARSKRALEKRAPKIVENPKTCLFLRGTTCSQITQDAMNDLYAMRQVHAKRFHKKNAIHPFEDATSLCFFSEKNDCSLMVFGSSNKKRPHTLTFVRMFDYKVLDMLEFYLDPDTYRSISQFKTSKIPIGMRPMMVFAGTAFESPVPNAFTMAKSMLIDFFRGEPSDKIDVEGLRFVVVVTADEPTSSTSTNNDGENPAPLPGMTDPRSIDPSQKPILRLRVYGIRTKRSGTRLPRVEVEEHGPRMDFRLGRMREPDPAMLKEAMKKAKTPQEERTKKNISMDLLGDKIGRIHMGKTDLSKLQTRKMKGLKRGRDEDEGGEDDRTDVVEAGSGEKKKKKKVKG
unknown E 23 Rubrivivax Gelatinosus Il144 , Ustilago Maydis (Strain 521 / Fgsc 9021) XXXXXXXXXXXXXXXXXXXXXXX
Syo1 F 676 Rubrivivax Gelatinosus Il144 , Ustilago Maydis (Strain 521 / Fgsc 9021) MGKTRRNRVRNRTDPIAKPVKPPTDPELAKLREDKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVFTSLQWMDHSPGKDGACDAILIPTLTRALEHVVPGGAKFNGDARYANITLLALVTLASIGTDFQETLVKGNQGSRESPISAADEEWNGFDDADGDAMDVDQKSSSGEDQEEDYEEIDVKEDDEDDDDDSITSEMQADMERVVGADGTDDGDLEDLPTLRELIQTAVPQLIRLSNLPIDSDESLTIQSHALSALNNISWTISCLEFANGENANIHNAWYPTAKKIWRKTILPILEADSADLKLATQVTSLAWAVARVLHGETPTDGNPHRKFISLYHSSKQQAGGNSNSIEEPEDPFQGLGVKCIGVVGSLAHDPAPIEVNREVGVFLVTLLRQSNNVPPAEIVEALNQLFDIYGDEELACDKEVFWKDGFLKHLEEFLPKMRTLTKGIDKRTQPELRTRADEALLNLGRFVQYKKKHAPK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5S rRNA 3 119 NA ACGUACGACCAUACCCAGUGGAAAGCACGGCAUCCCGUCCGCUCUGCCCUAGUUAAGCCACUGAGGGCCCGGUUAGUAGUUGGGUCGGUGACGACCAGCGAAUCCCGGGUGUUGUACGU
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2021-06-28
Deposition Author(s): Ameismeier, M. , Bassler, J. , Beck, M. , Beckmann, R. , Buschauer, R. , Castillo, N. , Flemming, D. , Hammaren, H.M. , Hurt, E. , Thoms, M.