7OMM
Cryo-em structure of n. gonorhoeae lptde in complex with promacrobodies (mbps have not been built de novo)
PDB DOI: 10.2210/pdb7omm/pdb
Classification: TRANSPORT PROTEIN Organism(s): Methanosarcina Mazei , Neisseria Gonorrhoeae , Synthetic Construct
Deposited: 2021-05-24 Deposition Author(s): Bocquet, N. , Botte, M. , Brunner, J.D. , Bucher, D. , Chami, M. , Cheng, R.K.Y. , Egloff, P. , Hennig, M. , Ni, D. , Schenck, S. , Seeger, M.A. , Stahlberg, H. , Trabuco, M. , Zimmermann, I.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.4 Å
Cryo-em structure of n. gonorhoeae lptde in complex with promacrobodies (mbps have not been built de novo)
Bocquet, N. , Botte, M. , Brunner, J.D. , Bucher, D. , Chami, M. , Cheng, R.K.Y. , Egloff, P. , Hennig, M. , Ni, D. , Schenck, S. , Seeger, M.A. , Stahlberg, H. , Trabuco, M. , Zimmermann, I.
Primary Citation of Related Structures: 7OMM
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| LPS-assembly protein LptD | A | 801 | Methanosarcina Mazei , Neisseria Gonorrhoeae , Synthetic Construct | MARLFSLKPLVLSLGFCFGTHCAADTVAAEEADGRVAEGGAQGASESAQASDLTLGSTCLFCSNESGSPERTEAAVQGSGEASVPEDYTRIVADRMEGQSKVKVRAEGSVIIERDGAVLNTDWADYDQSGDTVTVGDRFALQQDGTLIRGETLTYNLDQQTGEAHNVRMETEQGGRRLQSVSRTAEMLGEGRYKLTETQFNTCSAGDAGWYVKAASVEADRGKGIGVAKHAAFVFGGVPLFYTPWADFPLDGNRKSGLLVPSVSAGSDGVSLSVPYYFNLAPNFDATFAPGIIGERGATFDGQIRYLRPDYSGQTDLTWLPHDKKSGRNNRYQAKWQHRHDISDTLQAGVDFNQVSDSGYYRDFYGGEEIAGNVNLNRRVWLDYGGRAAGGSLNAGLSVQKYQTLANQSGYKDEPYAIMPRLSADWHKNAGRAQIGVSAQFTRFSHDGRQDGSRLVVYPGIKWDFSNSWGYVRPKLGLHATYYSLDSFGGKASRSVGRVLPVVNIDGGTTFERNTRLFGGGVVQTIEPRLFYNYIPAKSQNDLPNFDSSESSFGYGQLFRENLYYGNDRINAANSLSTAVQSRILDGATGEERFRAGIGQKFYFKDDAVMLDGSVGKNPRSRSDWVAFASGGIGGRFTLDSSIHYNQNDKRAEHYAVGAGYRPAPGKVLNARYKYGRNEKIYLQADGSYFYDKLSQLDLSAQWPLTRNLSAVVRYNYGFEAKKPIEMLAGAEYKSSCGCWGAGVYAQRYVTGENTYKNAVFFSLQLKDLSSVGRNPAGRMDVAVPGYIPAHSLSAGRNKRP |
| LPS-assembly lipoprotein LptE | B | 165 | Methanosarcina Mazei , Neisseria Gonorrhoeae , Synthetic Construct | MNKIFLTAAALVLGACGFHLKGADGISPPLTYRSWHIEGGQALQFPLETALYQASGRVDDAAGAQMTLRIDSVSQNKETYTVTRAAVINEYLLILTVEAQVLKRGEPVGKPMTVSVRRILDYADNEILGKQEEEETLWAEMRQDVAEQIVRRLTFLKAEHHHHHH |
| ProMacrobody 21,Maltodextrin-binding protein | C | 520 | Methanosarcina Mazei , Neisseria Gonorrhoeae , Synthetic Construct | GPSQVQLVESGGGLVQPGGSLRLSCAASGFPVKYEHMYWYRQAPGKEREWVAAINSAGNETHYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDIGWWAAYDYWGQGTQVTVPPLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTPGSGGGSAWSHPQFEKGGGSGGGSGGSAWSHPQFEKA |
| ProMacrobody 51,Maltodextrin-binding protein | D | 526 | Methanosarcina Mazei , Neisseria Gonorrhoeae , Synthetic Construct | GPSQVQLVESGGGSVQAGGSLRLSCAASGSISSITYLGWFRQAPGKEREGVAALATYYGHTYYADSVKGRFTVSLDNAKNTVYLQMNSLKPEDTALYYCAAAYSGIWTPLGVWATYEYWGQGTQVTVPPLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTPGSGGGSAWSHPQFEKGGGSGGGSGGSAWSHPQFEKA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2021-05-24 Deposition Author(s): Bocquet, N. , Botte, M. , Brunner, J.D. , Bucher, D. , Chami, M. , Cheng, R.K.Y. , Egloff, P. , Hennig, M. , Ni, D. , Schenck, S. , Seeger, M.A. , Stahlberg, H. , Trabuco, M. , Zimmermann, I.