7OKO
Structure of the outer-membrane core complex (outer ring) from a conjugative type iv secretion system
PDB DOI: 10.2210/pdb7oko/pdb
Classification: MEMBRANE PROTEIN Organism(s): Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6
Deposited: 2021-05-18 Deposition Author(s): Amin, H. , Costa, T.R.D. , Ilangovan, A.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.4 Å
Structure of the outer-membrane core complex (outer ring) from a conjugative type iv secretion system
Amin, H. , Costa, T.R.D. , Ilangovan, A.
Primary Citation of Related Structures: 7OKO
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Type IV conjugative transfer system lipoprotein TraV | AA | 204 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | MKKITLLLAGSALLLSGCAGVKSSFDCDATTSDTCMTMTKANQLARDKAAKQAGKPAAGGLPSLVNLPATSAVEVPSASRSAVTPPSGTRTVSTTPPVSAGTSAGVNTNTTTSTLTPRPVAGTPVTTTPSSVAYRPVVSVVTPTPSCQNVRCDNPGTVHPQRSRDQIATVWIAPWVDSDNAFHQPGRVSFVVSPADWVLPARVN |
| Type IV conjugative transfer system lipoprotein TraV | AB | 204 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | MKKITLLLAGSALLLSGCAGVKSSFDCDATTSDTCMTMTKANQLARDKAAKQAGKPAAGGLPSLVNLPATSAVEVPSASRSAVTPPSGTRTVSTTPPVSAGTSAGVNTNTTTSTLTPRPVAGTPVTTTPSSVAYRPVVSVVTPTPSCQNVRCDNPGTVHPQRSRDQIATVWIAPWVDSDNAFHQPGRVSFVVSPADWVLPARVN |
| Type IV conjugative transfer system lipoprotein TraV | 0 | 204 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | MKKITLLLAGSALLLSGCAGVKSSFDCDATTSDTCMTMTKANQLARDKAAKQAGKPAAGGLPSLVNLPATSAVEVPSASRSAVTPPSGTRTVSTTPPVSAGTSAGVNTNTTTSTLTPRPVAGTPVTTTPSSVAYRPVVSVVTPTPSCQNVRCDNPGTVHPQRSRDQIATVWIAPWVDSDNAFHQPGRVSFVVSPADWVLPARVN |
| Type IV conjugative transfer system lipoprotein TraV | 1 | 204 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | MKKITLLLAGSALLLSGCAGVKSSFDCDATTSDTCMTMTKANQLARDKAAKQAGKPAAGGLPSLVNLPATSAVEVPSASRSAVTPPSGTRTVSTTPPVSAGTSAGVNTNTTTSTLTPRPVAGTPVTTTPSSVAYRPVVSVVTPTPSCQNVRCDNPGTVHPQRSRDQIATVWIAPWVDSDNAFHQPGRVSFVVSPADWVLPARVN |
| Type IV conjugative transfer system lipoprotein TraV | 5 | 204 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | MKKITLLLAGSALLLSGCAGVKSSFDCDATTSDTCMTMTKANQLARDKAAKQAGKPAAGGLPSLVNLPATSAVEVPSASRSAVTPPSGTRTVSTTPPVSAGTSAGVNTNTTTSTLTPRPVAGTPVTTTPSSVAYRPVVSVVTPTPSCQNVRCDNPGTVHPQRSRDQIATVWIAPWVDSDNAFHQPGRVSFVVSPADWVLPARVN |
| Type IV conjugative transfer system lipoprotein TraV | 6 | 204 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | MKKITLLLAGSALLLSGCAGVKSSFDCDATTSDTCMTMTKANQLARDKAAKQAGKPAAGGLPSLVNLPATSAVEVPSASRSAVTPPSGTRTVSTTPPVSAGTSAGVNTNTTTSTLTPRPVAGTPVTTTPSSVAYRPVVSVVTPTPSCQNVRCDNPGTVHPQRSRDQIATVWIAPWVDSDNAFHQPGRVSFVVSPADWVLPARVN |
| Type IV conjugative transfer system lipoprotein TraV | C | 204 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | MKKITLLLAGSALLLSGCAGVKSSFDCDATTSDTCMTMTKANQLARDKAAKQAGKPAAGGLPSLVNLPATSAVEVPSASRSAVTPPSGTRTVSTTPPVSAGTSAGVNTNTTTSTLTPRPVAGTPVTTTPSSVAYRPVVSVVTPTPSCQNVRCDNPGTVHPQRSRDQIATVWIAPWVDSDNAFHQPGRVSFVVSPADWVLPARVN |
| TraB | D | 10 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | PGMMDSQEFS |
| Type IV conjugative transfer system lipoprotein TraV | H | 204 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | MKKITLLLAGSALLLSGCAGVKSSFDCDATTSDTCMTMTKANQLARDKAAKQAGKPAAGGLPSLVNLPATSAVEVPSASRSAVTPPSGTRTVSTTPPVSAGTSAGVNTNTTTSTLTPRPVAGTPVTTTPSSVAYRPVVSVVTPTPSCQNVRCDNPGTVHPQRSRDQIATVWIAPWVDSDNAFHQPGRVSFVVSPADWVLPARVN |
| TraB | I | 10 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | PGMMDSQEFS |
| Type IV conjugative transfer system lipoprotein TraV | M | 204 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | MKKITLLLAGSALLLSGCAGVKSSFDCDATTSDTCMTMTKANQLARDKAAKQAGKPAAGGLPSLVNLPATSAVEVPSASRSAVTPPSGTRTVSTTPPVSAGTSAGVNTNTTTSTLTPRPVAGTPVTTTPSSVAYRPVVSVVTPTPSCQNVRCDNPGTVHPQRSRDQIATVWIAPWVDSDNAFHQPGRVSFVVSPADWVLPARVN |
| TraB | N | 10 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | PGMMDSQEFS |
| Type IV conjugative transfer system lipoprotein TraV | R | 204 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | MKKITLLLAGSALLLSGCAGVKSSFDCDATTSDTCMTMTKANQLARDKAAKQAGKPAAGGLPSLVNLPATSAVEVPSASRSAVTPPSGTRTVSTTPPVSAGTSAGVNTNTTTSTLTPRPVAGTPVTTTPSSVAYRPVVSVVTPTPSCQNVRCDNPGTVHPQRSRDQIATVWIAPWVDSDNAFHQPGRVSFVVSPADWVLPARVN |
| TraB | S | 10 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | PGMMDSQEFS |
| Type IV conjugative transfer system lipoprotein TraV | W | 204 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | MKKITLLLAGSALLLSGCAGVKSSFDCDATTSDTCMTMTKANQLARDKAAKQAGKPAAGGLPSLVNLPATSAVEVPSASRSAVTPPSGTRTVSTTPPVSAGTSAGVNTNTTTSTLTPRPVAGTPVTTTPSSVAYRPVVSVVTPTPSCQNVRCDNPGTVHPQRSRDQIATVWIAPWVDSDNAFHQPGRVSFVVSPADWVLPARVN |
| TraB | X | 10 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | PGMMDSQEFS |
| Type-F conjugative transfer system secretin TraK | B | 216 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | AQSPATISLPQGGQFRLSISNTDPNMIFIPGDKVTAITAPGGMLADKRLTTAGGVLFTSVATRTFTIFVETALGQTFSVVATPVKGEGRVYRLMSAEPPSRPETRKWETAQAYEKLLISLNRAVLTGDIPDGYGEVKPLSDGIRLPGGFSVTPLKAWAGDQLRADRYELRNANTWGVALREQDFWKPGVRAVMFDNNAQTLMGGGRMTVTVIRGNG |
| Type-F conjugative transfer system secretin TraK | G | 216 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | AQSPATISLPQGGQFRLSISNTDPNMIFIPGDKVTAITAPGGMLADKRLTTAGGVLFTSVATRTFTIFVETALGQTFSVVATPVKGEGRVYRLMSAEPPSRPETRKWETAQAYEKLLISLNRAVLTGDIPDGYGEVKPLSDGIRLPGGFSVTPLKAWAGDQLRADRYELRNANTWGVALREQDFWKPGVRAVMFDNNAQTLMGGGRMTVTVIRGNG |
| Type-F conjugative transfer system secretin TraK | L | 216 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | AQSPATISLPQGGQFRLSISNTDPNMIFIPGDKVTAITAPGGMLADKRLTTAGGVLFTSVATRTFTIFVETALGQTFSVVATPVKGEGRVYRLMSAEPPSRPETRKWETAQAYEKLLISLNRAVLTGDIPDGYGEVKPLSDGIRLPGGFSVTPLKAWAGDQLRADRYELRNANTWGVALREQDFWKPGVRAVMFDNNAQTLMGGGRMTVTVIRGNG |
| Type-F conjugative transfer system secretin TraK | Q | 216 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | AQSPATISLPQGGQFRLSISNTDPNMIFIPGDKVTAITAPGGMLADKRLTTAGGVLFTSVATRTFTIFVETALGQTFSVVATPVKGEGRVYRLMSAEPPSRPETRKWETAQAYEKLLISLNRAVLTGDIPDGYGEVKPLSDGIRLPGGFSVTPLKAWAGDQLRADRYELRNANTWGVALREQDFWKPGVRAVMFDNNAQTLMGGGRMTVTVIRGNG |
| Type-F conjugative transfer system secretin TraK | V | 216 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | AQSPATISLPQGGQFRLSISNTDPNMIFIPGDKVTAITAPGGMLADKRLTTAGGVLFTSVATRTFTIFVETALGQTFSVVATPVKGEGRVYRLMSAEPPSRPETRKWETAQAYEKLLISLNRAVLTGDIPDGYGEVKPLSDGIRLPGGFSVTPLKAWAGDQLRADRYELRNANTWGVALREQDFWKPGVRAVMFDNNAQTLMGGGRMTVTVIRGNG |
| TraB | AC | 10 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | PGMMDSQEFS |
| TraB | 2 | 10 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | PGMMDSQEFS |
| TraB | 7 | 10 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | PGMMDSQEFS |
| Type-F conjugative transfer system secretin TraK | E | 216 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | AQSPATISLPQGGQFRLSISNTDPNMIFIPGDKVTAITAPGGMLADKRLTTAGGVLFTSVATRTFTIFVETALGQTFSVVATPVKGEGRVYRLMSAEPPSRPETRKWETAQAYEKLLISLNRAVLTGDIPDGYGEVKPLSDGIRLPGGFSVTPLKAWAGDQLRADRYELRNANTWGVALREQDFWKPGVRAVMFDNNAQTLMGGGRMTVTVIRGNG |
| Type-F conjugative transfer system secretin TraK | J | 216 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | AQSPATISLPQGGQFRLSISNTDPNMIFIPGDKVTAITAPGGMLADKRLTTAGGVLFTSVATRTFTIFVETALGQTFSVVATPVKGEGRVYRLMSAEPPSRPETRKWETAQAYEKLLISLNRAVLTGDIPDGYGEVKPLSDGIRLPGGFSVTPLKAWAGDQLRADRYELRNANTWGVALREQDFWKPGVRAVMFDNNAQTLMGGGRMTVTVIRGNG |
| Type-F conjugative transfer system secretin TraK | O | 216 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | AQSPATISLPQGGQFRLSISNTDPNMIFIPGDKVTAITAPGGMLADKRLTTAGGVLFTSVATRTFTIFVETALGQTFSVVATPVKGEGRVYRLMSAEPPSRPETRKWETAQAYEKLLISLNRAVLTGDIPDGYGEVKPLSDGIRLPGGFSVTPLKAWAGDQLRADRYELRNANTWGVALREQDFWKPGVRAVMFDNNAQTLMGGGRMTVTVIRGNG |
| Type-F conjugative transfer system secretin TraK | T | 216 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | AQSPATISLPQGGQFRLSISNTDPNMIFIPGDKVTAITAPGGMLADKRLTTAGGVLFTSVATRTFTIFVETALGQTFSVVATPVKGEGRVYRLMSAEPPSRPETRKWETAQAYEKLLISLNRAVLTGDIPDGYGEVKPLSDGIRLPGGFSVTPLKAWAGDQLRADRYELRNANTWGVALREQDFWKPGVRAVMFDNNAQTLMGGGRMTVTVIRGNG |
| Type-F conjugative transfer system secretin TraK | Y | 216 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | AQSPATISLPQGGQFRLSISNTDPNMIFIPGDKVTAITAPGGMLADKRLTTAGGVLFTSVATRTFTIFVETALGQTFSVVATPVKGEGRVYRLMSAEPPSRPETRKWETAQAYEKLLISLNRAVLTGDIPDGYGEVKPLSDGIRLPGGFSVTPLKAWAGDQLRADRYELRNANTWGVALREQDFWKPGVRAVMFDNNAQTLMGGGRMTVTVIRGNG |
| Type-F conjugative transfer system secretin TraK | 3 | 216 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | AQSPATISLPQGGQFRLSISNTDPNMIFIPGDKVTAITAPGGMLADKRLTTAGGVLFTSVATRTFTIFVETALGQTFSVVATPVKGEGRVYRLMSAEPPSRPETRKWETAQAYEKLLISLNRAVLTGDIPDGYGEVKPLSDGIRLPGGFSVTPLKAWAGDQLRADRYELRNANTWGVALREQDFWKPGVRAVMFDNNAQTLMGGGRMTVTVIRGNG |
| Type-F conjugative transfer system secretin TraK | 4 | 216 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | AQSPATISLPQGGQFRLSISNTDPNMIFIPGDKVTAITAPGGMLADKRLTTAGGVLFTSVATRTFTIFVETALGQTFSVVATPVKGEGRVYRLMSAEPPSRPETRKWETAQAYEKLLISLNRAVLTGDIPDGYGEVKPLSDGIRLPGGFSVTPLKAWAGDQLRADRYELRNANTWGVALREQDFWKPGVRAVMFDNNAQTLMGGGRMTVTVIRGNG |
| Type-F conjugative transfer system secretin TraK | 8 | 216 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | AQSPATISLPQGGQFRLSISNTDPNMIFIPGDKVTAITAPGGMLADKRLTTAGGVLFTSVATRTFTIFVETALGQTFSVVATPVKGEGRVYRLMSAEPPSRPETRKWETAQAYEKLLISLNRAVLTGDIPDGYGEVKPLSDGIRLPGGFSVTPLKAWAGDQLRADRYELRNANTWGVALREQDFWKPGVRAVMFDNNAQTLMGGGRMTVTVIRGNG |
| Type-F conjugative transfer system secretin TraK | 9 | 216 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | AQSPATISLPQGGQFRLSISNTDPNMIFIPGDKVTAITAPGGMLADKRLTTAGGVLFTSVATRTFTIFVETALGQTFSVVATPVKGEGRVYRLMSAEPPSRPETRKWETAQAYEKLLISLNRAVLTGDIPDGYGEVKPLSDGIRLPGGFSVTPLKAWAGDQLRADRYELRNANTWGVALREQDFWKPGVRAVMFDNNAQTLMGGGRMTVTVIRGNG |
| Type-F conjugative transfer system secretin TraK | A | 216 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | AQSPATISLPQGGQFRLSISNTDPNMIFIPGDKVTAITAPGGMLADKRLTTAGGVLFTSVATRTFTIFVETALGQTFSVVATPVKGEGRVYRLMSAEPPSRPETRKWETAQAYEKLLISLNRAVLTGDIPDGYGEVKPLSDGIRLPGGFSVTPLKAWAGDQLRADRYELRNANTWGVALREQDFWKPGVRAVMFDNNAQTLMGGGRMTVTVIRGNG |
| Type-F conjugative transfer system secretin TraK | F | 216 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | AQSPATISLPQGGQFRLSISNTDPNMIFIPGDKVTAITAPGGMLADKRLTTAGGVLFTSVATRTFTIFVETALGQTFSVVATPVKGEGRVYRLMSAEPPSRPETRKWETAQAYEKLLISLNRAVLTGDIPDGYGEVKPLSDGIRLPGGFSVTPLKAWAGDQLRADRYELRNANTWGVALREQDFWKPGVRAVMFDNNAQTLMGGGRMTVTVIRGNG |
| Type-F conjugative transfer system secretin TraK | K | 216 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | AQSPATISLPQGGQFRLSISNTDPNMIFIPGDKVTAITAPGGMLADKRLTTAGGVLFTSVATRTFTIFVETALGQTFSVVATPVKGEGRVYRLMSAEPPSRPETRKWETAQAYEKLLISLNRAVLTGDIPDGYGEVKPLSDGIRLPGGFSVTPLKAWAGDQLRADRYELRNANTWGVALREQDFWKPGVRAVMFDNNAQTLMGGGRMTVTVIRGNG |
| Type-F conjugative transfer system secretin TraK | P | 216 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | AQSPATISLPQGGQFRLSISNTDPNMIFIPGDKVTAITAPGGMLADKRLTTAGGVLFTSVATRTFTIFVETALGQTFSVVATPVKGEGRVYRLMSAEPPSRPETRKWETAQAYEKLLISLNRAVLTGDIPDGYGEVKPLSDGIRLPGGFSVTPLKAWAGDQLRADRYELRNANTWGVALREQDFWKPGVRAVMFDNNAQTLMGGGRMTVTVIRGNG |
| Type-F conjugative transfer system secretin TraK | U | 216 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | AQSPATISLPQGGQFRLSISNTDPNMIFIPGDKVTAITAPGGMLADKRLTTAGGVLFTSVATRTFTIFVETALGQTFSVVATPVKGEGRVYRLMSAEPPSRPETRKWETAQAYEKLLISLNRAVLTGDIPDGYGEVKPLSDGIRLPGGFSVTPLKAWAGDQLRADRYELRNANTWGVALREQDFWKPGVRAVMFDNNAQTLMGGGRMTVTVIRGNG |
| Type-F conjugative transfer system secretin TraK | Z | 216 | Salmonella Enterica , Salmonella Enterica Subsp. Salamae Serovar 58:L,Z13,Z28:Z6 | AQSPATISLPQGGQFRLSISNTDPNMIFIPGDKVTAITAPGGMLADKRLTTAGGVLFTSVATRTFTIFVETALGQTFSVVATPVKGEGRVYRLMSAEPPSRPETRKWETAQAYEKLLISLNRAVLTGDIPDGYGEVKPLSDGIRLPGGFSVTPLKAWAGDQLRADRYELRNANTWGVALREQDFWKPGVRAVMFDNNAQTLMGGGRMTVTVIRGNG |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2021-05-18 Deposition Author(s): Amin, H. , Costa, T.R.D. , Ilangovan, A.