7OK0
Cryo-em structure of the sulfolobus acidocaldarius rna polymerase at 2.88 a
PDB DOI: 10.2210/pdb7ok0/pdb
Classification: TRANSCRIPTION Organism(s): Sulfolobus Acidocaldarius (Strain Atcc 33909 / Dsm 639 / Jcm 8929 / Nbrc 15157 / Ncimb 11770)
Deposited: 2021-05-17 Deposition Author(s): Cheung, A.C.M. , Diaz-Santin, L.M. , Fouqueau, T. , Lucas-Staat, S. , Lukoyanova, N. , Matelska, D. , Pilotto, S. , Prangishvili, D. , Sheppard, C. , Werner, F.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.9 Å
Cryo-em structure of the sulfolobus acidocaldarius rna polymerase at 2.88 a
Cheung, A.C.M. , Diaz-Santin, L.M. , Fouqueau, T. , Lucas-Staat, S. , Lukoyanova, N. , Matelska, D. , Pilotto, S. , Prangishvili, D. , Sheppard, C. , Werner, F.
Primary Citation of Related Structures: 7OK0
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA-directed RNA polymerase subunit A' | A | 880 | Sulfolobus Acidocaldarius (Strain Atcc 33909 / Dsm 639 / Jcm 8929 / Nbrc 15157 / Ncimb 11770) | MSEKIIRGVKFGVLSPNEIRQMSVTAIITSEVYDEDGTPIEGGVMDPKLGVIEPGQKCPVCGNTLAGCPGHFGHIELIKPVIHIGYVKHIYDFLRSTCWRCGRIKIKEQDLERYKRIYNAIKLRWPSAARRLVEYIKKISIKNLECPHCGEKQFKIKLEKPYNFNEERNGSIVKLSPSEIRDRLERIPDSDVELLGYDPKSSRPEWMILTVLPVPPITIRPSITIESGIRAEDDLTHKLVDIIRLNERLKESIEAGAPQLIIEDLWDLLQYHVATYFDNEIPGLPPAKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSARTVISPDPNLSIDEVGIPYTIARMLTVPERVTNINIERIRQYIINGPDKWPGANYVIKPDGRRIDLRYVKDRKELASSITAGYVVERHLVDGDVVLFNRQPSLHRISMMAHKVRVLPGRTFRLNLLDCPPYNADFDGDEMNLHVPQSEEAIAEARELMLVHKNIITPRYGGPIIGGGQDYISGAYLLSVKTTLLTVEEVATILGVTDFVGELGEPAILAPKPYYTGKQVISLFLPKDFNFHGPANISKGPRACKDEICPHDSFIVIKNGLLLEGVFDKKAIGNQQPESMLHWSIREYGTEYGKWLMDNVFKMFIRFLEMRGFTMTLEDITIPDEAQNEITTKIKEGYSQVDEYIRKFNEGQLEPIPGRTIEESLESYILDTLDKLRKVAGEIATKYLDPFNNVYIMAITGARGSELNITQMTALLGQQSVRGERIRRGYRERTLSLFKYGDIAPEARGFVKNSFMRGLSPYEMFFHAAGGREGLVDTAVKTSQSGYMQRRLINALSDLRIEYDGTVRSLYGDIVQVVYGDDAVHPMYSAHSKSVNVNRVIERVIGWKR |
| DNA-directed RNA polymerase subunit L | L | 90 | Sulfolobus Acidocaldarius (Strain Atcc 33909 / Dsm 639 / Jcm 8929 / Nbrc 15157 / Ncimb 11770) | MEIKVIKEEQNYLELQIDGEEHTIGNLLKGMLLKVPGVKFAAYSLPHPLITSITIKILTDGSISAREALIKAIELAENYANLFIDEVKKI |
| DNA-directed RNA polymerase subunit N | N | 66 | Sulfolobus Acidocaldarius (Strain Atcc 33909 / Dsm 639 / Jcm 8929 / Nbrc 15157 / Ncimb 11770) | MIIPIRCFTCGAVVADKWEPFSNRVMGGEDPEKVLTELGVNRYCCRRMLLSHVNIIREIIHYTRPI |
| DNA-directed RNA polymerase subunit P | P | 48 | Sulfolobus Acidocaldarius (Strain Atcc 33909 / Dsm 639 / Jcm 8929 / Nbrc 15157 / Ncimb 11770) | MAKYRCGKCWKELDDDQLKTLPGVRCPYCGYRIIYMVRKPTVKIVKAI |
| Conserved protein | Q | 105 | Sulfolobus Acidocaldarius (Strain Atcc 33909 / Dsm 639 / Jcm 8929 / Nbrc 15157 / Ncimb 11770) | MSEDDSKKEPEPEETEAEIKHEEISREEDDEGGEFSTVTISDIEMLLKDTEIWDKLLRNELSIEEAKKMFDDVARSYSKADKKKRRVEKKPKKGKVTKKSDEEEE |
| DNA-directed RNA polymerase subunit B | B | 1126 | Sulfolobus Acidocaldarius (Strain Atcc 33909 / Dsm 639 / Jcm 8929 / Nbrc 15157 / Ncimb 11770) | MLDTESRWAIAESFFKTRGLVRQHLDSFNDFLRNKLQQVIYEQGEIVTEVPGLKIKLGKIRYEKPSIRETDKGPMREITPMEARLRNLTYSSPIFLSMIPVENNIEGEPIEIYIGDLPIMLKSVADPTSNLPIDKLIEIGEDPKDPGGYFIVNGSEKVIIAQEDLATNRVLVDYGKSGSNITHVAKVTSSAAGYRVQVMIERLKDSTIQISFATVPGRIPFAIIMRALGFVTDRDIVYAVSLDPQIQNELLPSLEQASSITSAEEALDFIGNRVAIGQKRENRIQKAEQVIDKYFLPHLGTSPEDRKKKGYYLASAVNKILELYLGRREPDDKDHYANKRVRLAGDLFTSLFRVAFKAFVKDLVYQLEKSKVRGRRLSLTALVRADIITERIRHALATGNWVGGRTGVSQLLDRTNWLSMLSHLRRVVSSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALLAQVSVGINESVVERVAYELGVVSVEDVIRRISEQNEDVEKYMSWSKVYLNGRLLGYYEDGKELAKKIRESRRQGKLSDEVNVAYIATDYLNEVHINCDAGRVRRPLIIVNNGTPLVDTEDIKKLKNGEITFDDLVKQGKIEFIDAEEEENAYVALNPQDLTPDHTHLEIWPSAILGIIASIIPYPEHNQSPRNTYQSAMAKQSLGLYASNYQIRTDTRAHLLHYPQMPLVQTRMLGVIGYNDRPAGANAILAIMSYTGYNMEDSIIMNKSSIERGMYRSTFFRLYSTEEVKYPGGQEDKIITPEAGVKGYKGKDYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKELSPEQAKRDTSIVTRHGENGIVDLVLITETLEGNKLVKVRVRDLRIPEIGDKFATRHGQKGVVGILIDQVDMPYTAKGIVPDIILNPHALPSRMTIGQIMEAIGGKYAALSGKPVDATPFLETPKLQEMQKEILKLGHLPDSTEVVYDGRTGQKLKSRILFGIVYYQKLHHMVADKMHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLIKDRLLDNSDKAVVYICDQCGYVGWYDRSKNRYVCPVHGDKSVLHPVTVSYAFKLLIQELMSMVISPRLILGEKVNLGGASNE |
| DNA-directed RNA polymerase subunit A'' | C | 393 | Sulfolobus Acidocaldarius (Strain Atcc 33909 / Dsm 639 / Jcm 8929 / Nbrc 15157 / Ncimb 11770) | MIDEKLKGYIDKRLNEIKDKIPDKLHEDLRAAIMDINGVELTEEDIDRIIDLTIREYQQSLIEPGEAIGVVTAQSVGEPGTQMTLRTFHFAGIRELNVTLGLPRLIEIVDARKVPSTPMMTIYLTDEYKTDKDKALDIARRIEYTRVENVVSSVSVDISNMSITLQFDQEMLKDKGVSIEEIKKIITKLKLGEIRIEDNDEYSFTIYFEKIDSIMALFKMREKILNTKIKGVKGIKRAIVQKKGDEYVIITDGSNLEGIMNVTGVDINKIQTNNIHEVEEVLGIEAARELISREIKKVLEEQGLDVDMRHIVLVSDIMTRTGDIRQIGRHGVTGEKSSVLARAAFEVTVKHLLDAAARGEREEFKGVIENIIIGQPIRLGTGIVELTMKPNMR |
| DNA-directed RNA polymerase subunit D | D | 264 | Sulfolobus Acidocaldarius (Strain Atcc 33909 / Dsm 639 / Jcm 8929 / Nbrc 15157 / Ncimb 11770) | MPISLIERNGLRLRLVLENYPLEFVNSIRRASILYVPVMAVDEVYFIENNSPLYDEILAHRLALVPFVSDEALEHYRPPEECAECKENCDGCYNRVYLDVEAKDQPLMIYSRDLKSEDQMITPVSGAIPIVLLGSKQKISLEARLRLGYGKEHIKYSPVSVSIVRYYPKVTVLGNCEKAVEVCPEGVFAMENNKLVVKNELSCILCEECLKYCAGSVSIESVENKFILEIESVGSLKPERILIEASKSLLRKLSELKSKLEAGK |
| DNA-directed RNA polymerase subunit E | E | 183 | Sulfolobus Acidocaldarius (Strain Atcc 33909 / Dsm 639 / Jcm 8929 / Nbrc 15157 / Ncimb 11770) | MFKLVRAKGIVRIPPEYFGQSVDEIAIKILRQEYQEKLIKDIGVVLGIVNAKASEEGFIIFGDGATYHEVEFDMLVYTPIIHEVIEGEVSQVDNYGVYVNMGPVDGLVHISQITDDNLKFDSNRGILIGEKSKKSIQKGDRVRAMIISASMSSGRLPRIALTMKQPYLGKIEWINQEIAKASK |
| DNA-directed RNA polymerase, subunit F | F | 114 | Sulfolobus Acidocaldarius (Strain Atcc 33909 / Dsm 639 / Jcm 8929 / Nbrc 15157 / Ncimb 11770) | MSYSLKTIEEHFVPYSIAKKYIKELIDTGSSSNLIQKTFDYLNSISRCDEDSASKIMKELEEIVKREDVRAVLASICPTTVEEVRSVLVIDPSTIYSTEQIQKIIEIIKKYVES |
| DNA-directed RNA polymerase, subunit G | G | 130 | Sulfolobus Acidocaldarius (Strain Atcc 33909 / Dsm 639 / Jcm 8929 / Nbrc 15157 / Ncimb 11770) | MKEMMQGTCKISSIEKGALKNLYVVKMDCDNDLKIEFDITKELSIFSKDEEVTFIISREKPEYSEKDFCAHGYLFLERQQEDGSFIDEISLYGLIVKILSKNGLINSKLFKMMDHVYYCVKKKAHHHHHH |
| DNA-directed RNA polymerase subunit H | H | 84 | Sulfolobus Acidocaldarius (Strain Atcc 33909 / Dsm 639 / Jcm 8929 / Nbrc 15157 / Ncimb 11770) | MRSSSKKKIDISNHELVPKHEILQLEEAYKLVKELGIKPEQLPWIRASDPVAKSIGAKPGDIIKITRKSPFTGESVTYRYVITG |
| DNA-directed RNA polymerase subunit K | K | 89 | Sulfolobus Acidocaldarius (Strain Atcc 33909 / Dsm 639 / Jcm 8929 / Nbrc 15157 / Ncimb 11770) | MTIDKINEIFKENWKNKLTKYEIARIISARALQLSMGALPLIDTSNLKSDDVISIAEEELKRGVLPITIRRIYPNGQVELISVRKIENR |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2021-05-17 Deposition Author(s): Cheung, A.C.M. , Diaz-Santin, L.M. , Fouqueau, T. , Lucas-Staat, S. , Lukoyanova, N. , Matelska, D. , Pilotto, S. , Prangishvili, D. , Sheppard, C. , Werner, F.