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FASTA Sequence PDB Format mmCIF Format
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7NXQ

Structure of the pentameric c-terminal domain of the capsid protein from kaposi's sarcoma-associated herpesvirus (kshv)

PDB DOI: 10.2210/pdb7nxq/pdb

Classification: VIRAL PROTEIN
Organism(s): Human Herpesvirus 8

Deposited: 2021-03-19
Deposition Author(s): Krey, T. , Legrand, P. , Naniima, P.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.422 Å

7nxq
Literature

Structure of the pentameric c-terminal domain of the capsid protein from kaposi's sarcoma-associated herpesvirus (kshv)

Krey, T. , Legrand, P. , Naniima, P.

Primary Citation of Related Structures: 7NXQ


Proteins
Molecule Chains Sequence Length Organism Sequence
Capsid vertex component 2 A 443 Human Herpesvirus 8 MASHRNFTVAIVPGDPHFSVDRDLRGELMPTLYMNQNQWLPSFGPWFISLTDNAMQRRVFPKELKGTVNFQNSTSLKLISHTLTTVASTTADFFADARHLTDTQAALCLVNAYFCQKTSRQLPATPDDLLADLPQKLDLLITQLKQESGPGDFSFTYSNPQERASLAPLNKESRYPTAFFQRHKLHAMMAKAGLFPHNKGTGAPGTAPAMDLVFAITSAMFGSDIPPFSAYQWNLRAGIVALEVFILAYGLLEFGQVARGHPNRRLNLVSLLGPKFQPGALPDPNAPMLKRGQLFSFISEHYIIPTLQANPNAPVSFIFPGIILAALEARSTVSHKQPGPFVNLTGSRFNEIFEILNQQLTFRDPLALLQARTALRLATEEGLDVLLSHPSPPTLLQEIIKSQFGGGDDYDRAYFMVLGCLPVVLAVVPAAALEHHHHHHHHH
Capsid vertex component 2 B 443 Human Herpesvirus 8 MASHRNFTVAIVPGDPHFSVDRDLRGELMPTLYMNQNQWLPSFGPWFISLTDNAMQRRVFPKELKGTVNFQNSTSLKLISHTLTTVASTTADFFADARHLTDTQAALCLVNAYFCQKTSRQLPATPDDLLADLPQKLDLLITQLKQESGPGDFSFTYSNPQERASLAPLNKESRYPTAFFQRHKLHAMMAKAGLFPHNKGTGAPGTAPAMDLVFAITSAMFGSDIPPFSAYQWNLRAGIVALEVFILAYGLLEFGQVARGHPNRRLNLVSLLGPKFQPGALPDPNAPMLKRGQLFSFISEHYIIPTLQANPNAPVSFIFPGIILAALEARSTVSHKQPGPFVNLTGSRFNEIFEILNQQLTFRDPLALLQARTALRLATEEGLDVLLSHPSPPTLLQEIIKSQFGGGDDYDRAYFMVLGCLPVVLAVVPAAALEHHHHHHHHH
Capsid vertex component 2 C 443 Human Herpesvirus 8 MASHRNFTVAIVPGDPHFSVDRDLRGELMPTLYMNQNQWLPSFGPWFISLTDNAMQRRVFPKELKGTVNFQNSTSLKLISHTLTTVASTTADFFADARHLTDTQAALCLVNAYFCQKTSRQLPATPDDLLADLPQKLDLLITQLKQESGPGDFSFTYSNPQERASLAPLNKESRYPTAFFQRHKLHAMMAKAGLFPHNKGTGAPGTAPAMDLVFAITSAMFGSDIPPFSAYQWNLRAGIVALEVFILAYGLLEFGQVARGHPNRRLNLVSLLGPKFQPGALPDPNAPMLKRGQLFSFISEHYIIPTLQANPNAPVSFIFPGIILAALEARSTVSHKQPGPFVNLTGSRFNEIFEILNQQLTFRDPLALLQARTALRLATEEGLDVLLSHPSPPTLLQEIIKSQFGGGDDYDRAYFMVLGCLPVVLAVVPAAALEHHHHHHHHH
Capsid vertex component 2 D 443 Human Herpesvirus 8 MASHRNFTVAIVPGDPHFSVDRDLRGELMPTLYMNQNQWLPSFGPWFISLTDNAMQRRVFPKELKGTVNFQNSTSLKLISHTLTTVASTTADFFADARHLTDTQAALCLVNAYFCQKTSRQLPATPDDLLADLPQKLDLLITQLKQESGPGDFSFTYSNPQERASLAPLNKESRYPTAFFQRHKLHAMMAKAGLFPHNKGTGAPGTAPAMDLVFAITSAMFGSDIPPFSAYQWNLRAGIVALEVFILAYGLLEFGQVARGHPNRRLNLVSLLGPKFQPGALPDPNAPMLKRGQLFSFISEHYIIPTLQANPNAPVSFIFPGIILAALEARSTVSHKQPGPFVNLTGSRFNEIFEILNQQLTFRDPLALLQARTALRLATEEGLDVLLSHPSPPTLLQEIIKSQFGGGDDYDRAYFMVLGCLPVVLAVVPAAALEHHHHHHHHH
Capsid vertex component 2 E 443 Human Herpesvirus 8 MASHRNFTVAIVPGDPHFSVDRDLRGELMPTLYMNQNQWLPSFGPWFISLTDNAMQRRVFPKELKGTVNFQNSTSLKLISHTLTTVASTTADFFADARHLTDTQAALCLVNAYFCQKTSRQLPATPDDLLADLPQKLDLLITQLKQESGPGDFSFTYSNPQERASLAPLNKESRYPTAFFQRHKLHAMMAKAGLFPHNKGTGAPGTAPAMDLVFAITSAMFGSDIPPFSAYQWNLRAGIVALEVFILAYGLLEFGQVARGHPNRRLNLVSLLGPKFQPGALPDPNAPMLKRGQLFSFISEHYIIPTLQANPNAPVSFIFPGIILAALEARSTVSHKQPGPFVNLTGSRFNEIFEILNQQLTFRDPLALLQARTALRLATEEGLDVLLSHPSPPTLLQEIIKSQFGGGDDYDRAYFMVLGCLPVVLAVVPAAALEHHHHHHHHH
Capsid vertex component 2 F 443 Human Herpesvirus 8 MASHRNFTVAIVPGDPHFSVDRDLRGELMPTLYMNQNQWLPSFGPWFISLTDNAMQRRVFPKELKGTVNFQNSTSLKLISHTLTTVASTTADFFADARHLTDTQAALCLVNAYFCQKTSRQLPATPDDLLADLPQKLDLLITQLKQESGPGDFSFTYSNPQERASLAPLNKESRYPTAFFQRHKLHAMMAKAGLFPHNKGTGAPGTAPAMDLVFAITSAMFGSDIPPFSAYQWNLRAGIVALEVFILAYGLLEFGQVARGHPNRRLNLVSLLGPKFQPGALPDPNAPMLKRGQLFSFISEHYIIPTLQANPNAPVSFIFPGIILAALEARSTVSHKQPGPFVNLTGSRFNEIFEILNQQLTFRDPLALLQARTALRLATEEGLDVLLSHPSPPTLLQEIIKSQFGGGDDYDRAYFMVLGCLPVVLAVVPAAALEHHHHHHHHH
Capsid vertex component 2 G 443 Human Herpesvirus 8 MASHRNFTVAIVPGDPHFSVDRDLRGELMPTLYMNQNQWLPSFGPWFISLTDNAMQRRVFPKELKGTVNFQNSTSLKLISHTLTTVASTTADFFADARHLTDTQAALCLVNAYFCQKTSRQLPATPDDLLADLPQKLDLLITQLKQESGPGDFSFTYSNPQERASLAPLNKESRYPTAFFQRHKLHAMMAKAGLFPHNKGTGAPGTAPAMDLVFAITSAMFGSDIPPFSAYQWNLRAGIVALEVFILAYGLLEFGQVARGHPNRRLNLVSLLGPKFQPGALPDPNAPMLKRGQLFSFISEHYIIPTLQANPNAPVSFIFPGIILAALEARSTVSHKQPGPFVNLTGSRFNEIFEILNQQLTFRDPLALLQARTALRLATEEGLDVLLSHPSPPTLLQEIIKSQFGGGDDYDRAYFMVLGCLPVVLAVVPAAALEHHHHHHHHH
Capsid vertex component 2 H 443 Human Herpesvirus 8 MASHRNFTVAIVPGDPHFSVDRDLRGELMPTLYMNQNQWLPSFGPWFISLTDNAMQRRVFPKELKGTVNFQNSTSLKLISHTLTTVASTTADFFADARHLTDTQAALCLVNAYFCQKTSRQLPATPDDLLADLPQKLDLLITQLKQESGPGDFSFTYSNPQERASLAPLNKESRYPTAFFQRHKLHAMMAKAGLFPHNKGTGAPGTAPAMDLVFAITSAMFGSDIPPFSAYQWNLRAGIVALEVFILAYGLLEFGQVARGHPNRRLNLVSLLGPKFQPGALPDPNAPMLKRGQLFSFISEHYIIPTLQANPNAPVSFIFPGIILAALEARSTVSHKQPGPFVNLTGSRFNEIFEILNQQLTFRDPLALLQARTALRLATEEGLDVLLSHPSPPTLLQEIIKSQFGGGDDYDRAYFMVLGCLPVVLAVVPAAALEHHHHHHHHH
Capsid vertex component 2 I 443 Human Herpesvirus 8 MASHRNFTVAIVPGDPHFSVDRDLRGELMPTLYMNQNQWLPSFGPWFISLTDNAMQRRVFPKELKGTVNFQNSTSLKLISHTLTTVASTTADFFADARHLTDTQAALCLVNAYFCQKTSRQLPATPDDLLADLPQKLDLLITQLKQESGPGDFSFTYSNPQERASLAPLNKESRYPTAFFQRHKLHAMMAKAGLFPHNKGTGAPGTAPAMDLVFAITSAMFGSDIPPFSAYQWNLRAGIVALEVFILAYGLLEFGQVARGHPNRRLNLVSLLGPKFQPGALPDPNAPMLKRGQLFSFISEHYIIPTLQANPNAPVSFIFPGIILAALEARSTVSHKQPGPFVNLTGSRFNEIFEILNQQLTFRDPLALLQARTALRLATEEGLDVLLSHPSPPTLLQEIIKSQFGGGDDYDRAYFMVLGCLPVVLAVVPAAALEHHHHHHHHH
Capsid vertex component 2 J 443 Human Herpesvirus 8 MASHRNFTVAIVPGDPHFSVDRDLRGELMPTLYMNQNQWLPSFGPWFISLTDNAMQRRVFPKELKGTVNFQNSTSLKLISHTLTTVASTTADFFADARHLTDTQAALCLVNAYFCQKTSRQLPATPDDLLADLPQKLDLLITQLKQESGPGDFSFTYSNPQERASLAPLNKESRYPTAFFQRHKLHAMMAKAGLFPHNKGTGAPGTAPAMDLVFAITSAMFGSDIPPFSAYQWNLRAGIVALEVFILAYGLLEFGQVARGHPNRRLNLVSLLGPKFQPGALPDPNAPMLKRGQLFSFISEHYIIPTLQANPNAPVSFIFPGIILAALEARSTVSHKQPGPFVNLTGSRFNEIFEILNQQLTFRDPLALLQARTALRLATEEGLDVLLSHPSPPTLLQEIIKSQFGGGDDYDRAYFMVLGCLPVVLAVVPAAALEHHHHHHHHH
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2021-03-19
Deposition Author(s): Krey, T. , Legrand, P. , Naniima, P.