7NAF
State e2 nucleolar 60s ribosomal biogenesis intermediate - spb1-mtd local model
PDB DOI: 10.2210/pdb7naf/pdb
Classification: RIBOSOME Organism(s): Saccharomyces Cerevisiae By4741
Deposited: 2021-06-21 Deposition Author(s): Cruz, V.E. , Erzberger, J.P. , Peddada, N. , Sekulski, K.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.13 Å
State e2 nucleolar 60s ribosomal biogenesis intermediate - spb1-mtd local model
Cruz, V.E. , Erzberger, J.P. , Peddada, N. , Sekulski, K.
Primary Citation of Related Structures: 7NAF
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 25S rRNA | 1 | 378 | NA | AUAGGGUGAAGCCAGAGGAAACUCUGGUGGAGGCUCGAAAAUGGAAUUAGACUGAAGGUCGGCGCCCUGGAGUUAUCUUUUCUUGUUUAUCCCGCUUCGGCCCCAAGGUGAACAGCCUCUAAUGUAGAUAAGGGAAGUCGGGGGAAUCUGACUGUUAACGAGAUUCCCACUGUCCCUAUCUACUCGGGGAACUGGCUUGUCGGCUCUUCCUAUCAUACCAUUCGGUAAGCGUUGGAUUGUUCACCCACUAAUAGGGAACGUGAGCUGAAUUGAACUUAGGAACAGUUCAUUCGGAUAAUUGGUUUUUGCGGCUGUCUGAUCAGGCAUUGCCGCGAAGCUACCAUCCGAAUCUAUAUAUUGUAAGCUGAGAUUAAGCCU |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 60S ribosome ribosomal protein L19A | R | 62 | Saccharomyces Cerevisiae By4741 | KAVTVHSKRLPSQVVWIRRLRVLRRLLAKYRIDKHLYHVLYKESKGNAFKHKRALVEHIIQA |
| 60S ribosomal protein L30 | C | 41 | Saccharomyces Cerevisiae By4741 | LGYIIIAANTPVLRKSVYYFQGGNNELGTAVGKLFRVGVVS |
| 60S ribosome biogenesis factor Nog1 | B | 74 | Saccharomyces Cerevisiae By4741 | IVLNRTQRKTPTVIRPGFKITRIRAFYMRKVKYTGEGMPEILDGKNVYIRNRQKTMIAEARNRKSLKNKAIMPR |
| UPF0642 protein YBL028C | Z | 6 | Saccharomyces Cerevisiae By4741 | AKSLRA |
| Nuclear GTP-binding protein NUG1 | S | 7 | Saccharomyces Cerevisiae By4741 | MRVRKRQ |
| Eukaryotic translation initiation factor 6 | Y | 245 | Saccharomyces Cerevisiae By4741 | MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRLQDAQPESISGNLRDTLIETYS |
| 25S rRNA (cytosine(2870)-C(5))-methyltransferase | Q | 36 | Saccharomyces Cerevisiae By4741 | LAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGATP |
| Ribosomal RNA-processing protein 17 | 5 | 105 | Saccharomyces Cerevisiae By4741 | NRQILTRGKQSKKFGTDEVTFDKDSRLDYLTGFHKRKLQRQKKAQEFIKEQERLRKIEERQKIRQERKEVMEEQLKTFKESLNLKFRYLTKNERRINQRKANDNK |
| Nucleolar complex protein 2 | 8 | 39 | Saccharomyces Cerevisiae By4741 | KVSKSTKKFQSKHLKHTLDQRRKEKIQKKRIQGRRGNKT |
| 60S ribosomal protein L23-A | V | 134 | Saccharomyces Cerevisiae By4741 | NGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECADLWPRVASNSGVVV |
| 60S ribosomal protein L22-A | U | 18 | Saccharomyces Cerevisiae By4741 | KYLKYLTKKYLKKNQLRD |
| 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase | W | 389 | Saccharomyces Cerevisiae By4741 | MGKTQKKNSKGRLDRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVASKLCPVNSLIIGVDIVPMKPMPNVITFQSDITTEDCRSKLRGYMKTWKADTVLHDGAPNVGLGWVQDAFTQSQLTLQALKLAVENLVVNGTFVTKIFRSKDYNKLIWVFQQLFEKVEATKPPASRNVSAEIFVVCKGFKAPKRLDPRLLDPKEVFEELPDGQQNMESKIYNPEKKVRKRQGYEEGDNLLYHETSILDFVRTEDPISMLGEMNKFTIDENDHEWKILKKLKQTTDEFRSCIEDLKVLGKKDFKMILRWRKIAREILGIEVKDDAKTEIEVVPLTEEEQIEKDLQGLQEKQRLNVKRERRRKNEMKQKELQRMQMNM |
| 60S ribosomal protein L31-A | D | 60 | Saccharomyces Cerevisiae By4741 | TINLHKRLHGVSFKKRAPRAVKEIKKFAKLHMGTDDVRLAPELNQAIWKRGVKGVEYRLR |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2021-06-21 Deposition Author(s): Cruz, V.E. , Erzberger, J.P. , Peddada, N. , Sekulski, K.