7MJI
Cryo-em structure of the sars-cov-2 n501y mutant spike protein ectodomain bound to vh ab8 (focused refinement of rbd and vh ab8)
PDB DOI: 10.2210/pdb7mji/pdb
Classification: Viral Protein/Immune System Organism(s): Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct
Deposited: 2021-04-20 Deposition Author(s): Berezuk, A.M. , Chittori, S. , Demers, J.P. , Dimitrov, D.S. , Leopold, K. , Li, W. , Mannar, D. , Saville, J.W. , Srivastava, S.S. , Subramaniam, S. , Tuttle, K.S. , Zhou, S. , Zhu, X.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.81 Å
Cryo-em structure of the sars-cov-2 n501y mutant spike protein ectodomain bound to vh ab8 (focused refinement of rbd and vh ab8)
Berezuk, A.M. , Chittori, S. , Demers, J.P. , Dimitrov, D.S. , Leopold, K. , Li, W. , Mannar, D. , Saville, J.W. , Srivastava, S.S. , Subramaniam, S. , Tuttle, K.S. , Zhou, S. , Zhu, X.
Primary Citation of Related Structures: 7MJI
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Spike glycoprotein | B | 1288 | Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct | MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTYGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPGSASSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSPIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGPALQIPFPMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTPSALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGRSLEVLFQGPGHHHHHHHHSAWSHPQFEKGGGSGGGGSGGSAWSHPQFEK |
| VH ab8 | E | 145 | Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct | EVQLVESGGGLVQPGGSLRLSCAASGFTFDDYAMSWVRQAPGKGLEWIGRMYNNGRTSYNPSLKSLVTISRDNSKNTLYLQMNSLRAEDTATYYCARDNLGYRPSENLYGMDVWGQGTTVTVSSSGQAGHHHHHHGDYKDDDDKG |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2021-04-20 Deposition Author(s): Berezuk, A.M. , Chittori, S. , Demers, J.P. , Dimitrov, D.S. , Leopold, K. , Li, W. , Mannar, D. , Saville, J.W. , Srivastava, S.S. , Subramaniam, S. , Tuttle, K.S. , Zhou, S. , Zhu, X.