7M4U
A. baumannii ribosome-eravacycline complex: 30s
PDB DOI: 10.2210/pdb7m4u/pdb
Classification: RIBOSOME Organism(s): Acinetobacter Baumannii (Strain Ab0057)
Deposited: 2021-03-22 Deposition Author(s): Morgan, C.E. , Yu, E.W.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.71 Å
A. baumannii ribosome-eravacycline complex: 30s
Primary Citation of Related Structures: 7M4U
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 16s Ribosomal RNA | a | 1544 | NA | UUUAACUGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCUUAACACAUGCAAGUCGAGCGGGGGAAGGUAGCUUGCUACCGGACCUAGCGGCGGACGGGUGAGUAAUGCUUAGGAAUCUGCCUAUUAGUGGGGGACAACAUCUCGAAAGGGAUGCUAAUACCGCAUACGUCCUACGGGAGAAAGCAGGGGAUCUUCGGACCUUGCGCUAAUAGAUGAGCCUAAGUCGGAUUAGCUAGUUGGUGGGGUAAAGGCCUACCAAGGCGACGAUCUGUAGCGGGUCUGAGAGGAUGAUCCGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGGGGAACCCUGAUCCAGCCAUGCCGCGUGUGUGAAGAAGGCCUUAUGGUUGUAAAGCACUUUAAGCGAGGAGGAGGCUACUCUAGUUAAUACCUAGGGAUAGUGGACGUUACUCGCAGAAUAAGCACCGGCUAACUCUGUGCCAGCAGCCGCGGUAAUACAGAGGGUGCGAGCGUUAAUCGGAUUUACUGGGCGUAAAGCGUGCGUAGGCGGCUUAUUAAGUCGGAUGUGAAAUCCCCGAGCUUAACUUGGGAAUUGCAUUCGAUACUGGUGAGCUAGAGUAUGGGAGAGGAUGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCGAUGGCGAAGGCAGCCAUCUGGCCUAAUACUGACGCUGAGGUACGAAAGCAUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCAUGCCGUAAACGAUGUCUACUAGCCGUUGGGGCCUUUGAGGCUUUAGUGGCGCAGCUAACGCGAUAAGUAGACCGCCUGGGGAGUACGGUCGCAAGACUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGCCUUGACAUACUAGAAACUUUUCAGAGAUGGAUUGGUGCCUUCGGGAACCUAGAUACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUUUCCUUACUUGCCAGCAUUUCGGAUGGGAACUUUAAGGAUACUGCCAGUGACAAACUGGAGGAAGGCGGGGACGACGUCAAGUCAUCAUGGCCCUUACGGCCAGGGCUACACACGUGCUACAAUGGUCGGUACAAAGGGUUGCUACACAGCGAUGUGAUGCUAAUCUCAAAAAGCCGAUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGCGGAUCAGAAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUUGUUGCACCAGAAGUAGCUAGCCUAACUGCAAAGAGGGCGGUUACCACGGUGUGGCCGAUGACUGGGGUGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGGAUCACCUCCUUAACGAA |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 30S ribosomal protein S10 | J | 103 | Acinetobacter Baumannii (Strain Ab0057) | MSNQRIRIRLKSFDHRLIDQSAQEIVETAKRTGAQVCGPIPMPTRIERFNVLTSPHVNKDARDQYEIRTYKRLIDIVQPTDKTVDALMKLDLAAGVDVQIALG |
| 30S ribosomal protein S11 | K | 128 | Acinetobacter Baumannii (Strain Ab0057) | MAKDTRTRKKVTRTVSEGVAHIHASFNNTIVTITDRQGNALAWATSGGQGFRGSRKSTPFAAQVAAEVAGKAALDYGLKNLDVLVKGPGPGRESAVRALGAVGYKINSITDVTPIPHNGCRPPKKRRV |
| 30S ribosomal protein S12 | L | 124 | Acinetobacter Baumannii (Strain Ab0057) | MATTNQLIRKGRTTLVEKSKVPALKACPQRRGVCTRVYTTTPKKPNSAMRKVCRVRLTSGFEVSSYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGSLDCAGVKDRNQSRSKYGAKRPKK |
| 30S ribosomal protein S13 | M | 118 | Acinetobacter Baumannii (Strain Ab0057) | MARIAGVNIPDNKHAVISLTYIFGIGRHTAKNILAAVGITETTKIRELDDAQLDAIRAEVAKVPTEGDLRREISMNIKRLMDLGCYRGLRHRRSLPVRGQRTKTNARTRKGPRKPIKK |
| 30S ribosomal protein S14 | N | 101 | Acinetobacter Baumannii (Strain Ab0057) | MAKKGMINRELKREKTVAKYAAKRAELKATIANVNASDEERFEAMLKLQALPRNASPVRLRNRCGLTGRPHGYFRKFGLSRNKLRDTVMQGDVPGVVKASW |
| 30S ribosomal protein S15 | O | 89 | Acinetobacter Baumannii (Strain Ab0057) | MALTNADRAEIIAKFARAENDTGSPEVQVALLTAQINDLQGHFKAHKHDHHSRRGLIRMVNQRRKLLDYLNGKDHERYTALIGALGLRR |
| 30S ribosomal protein S16 | P | 101 | Acinetobacter Baumannii (Strain Ab0057) | MLPMVGAGIIRKNYKAFIMVVIRLARGGAKKRPFYQIVVTDSRNARDGRFIERIGFFNPTAQGQAEKLRLDADRFAHWVSQGAQPSERVASLAAQAKKATA |
| 30S ribosomal protein S17 | Q | 85 | Acinetobacter Baumannii (Strain Ab0057) | MSEKTVRTLTGKVVSDKMDKSIVVLIERRVQHPLYGKSIRRSTKLHAHDENNVAKIGDVVTIKESRPISKTKAWTLVEVVEAAAE |
| 30S ribosomal protein S18 | R | 75 | Acinetobacter Baumannii (Strain Ab0057) | MARFYRRRKFCRFTAENVAYIDYKDIDTLKQYITENGKIVPSRITGTKARYQRQLALAIKQARYLSLIPYTDNHK |
| 30S ribosomal protein S19 | S | 91 | Acinetobacter Baumannii (Strain Ab0057) | MPRSLKKGPFVDAHLFAKVEAAVASNSRKPIKTWSRRSMILPDFVGLTISVHNGRNHVPVIVTEHMVGHKLGEFAPTRTYRGHGVDKKSKR |
| 30S ribosomal protein S2 | B | 250 | Acinetobacter Baumannii (Strain Ab0057) | MADYNVSMRDLLQAGAHFGHQTRFWNPKMRQYIFGARNKIHIINLEHTVPALNDALNFANQLASKKNKVLFVGTKRAASNIIREQAQRAGQPYVDHRWLGGMLTNWKTLRQSINRLKDLQTQSQDGTFAKLTKREALERTREMEKLERSLGGVKNMGGLPDALFVIDVDHEAIAIKEAKNLGIPVIGIVDTNSNPDNVDYVIPGNDDAIRAVTLYASAMADAILAGKEYAQSQANAQAKGDDAAKDASEA |
| 30S ribosomal protein S20 | T | 88 | Acinetobacter Baumannii (Strain Ab0057) | MANSAQAKKRARQNVKARKHNASLRSMVRTYIKRTLSAIAGGDYAVATEAYKKAVPVIDRMADKGIIHKNKAARHKSRLNAQVKALAN |
| 30S ribosomal protein S21 | U | 71 | Acinetobacter Baumannii (Strain Ab0057) | MPQVKLKEGEPVDVAIRRFKRSCEKAGVLADVRKREFYEKPTQERKRKKAAAVKRYQKKLARESVRTTRLY |
| 30S ribosomal protein S3 | C | 250 | Acinetobacter Baumannii (Strain Ab0057) | MGQKVHPIGIRLGVVKRHNANWYANPKQYAEYLLKDLQVREFLTKKLKNAMVSNILIERPSGAAKVTISTARPGIVIGKKGEDIEKLQRELTNIMGVPAQVSINEIDRPDLDARLVAEAIASQLEKRVMFRRAMKRAVQNTMRAGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRADIDYATMRAETTYGTIGVKVWIFRGEILGGMKQVMNPAPAEERPAKRGRGRGEGQERRGRRGDRAADKGE |
| 30S ribosomal protein S4 | D | 208 | Acinetobacter Baumannii (Strain Ab0057) | MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKANKAPGQHGQARGGKQSEYSLQLREKQKVRRIYGVLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQLVSHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAIELAAQRGIPAWIEVDHSKLEGTFKAAPDRSDLPAEINESLIVELYSK |
| 30S ribosomal protein S5 | E | 165 | Acinetobacter Baumannii (Strain Ab0057) | MAKVEQNEGLVEKLVAVDRVAKVVKGGRIFSFTALTVVGDGNGRVGFGRGKAREVPAAISKALEAARRNMITVDLAGTTLQHPVNARHGASRVYMQPASEGTGVIAGGAMRAVLEAAGVHNVLAKCYGSTNAANVVNATFKGLRDMTSPEKVAAKRGKSVEEIQG |
| 30S ribosomal protein S6 | F | 127 | Acinetobacter Baumannii (Strain Ab0057) | MRHYEIVLLVHPDQSDQVVGMVERYISQIKEADGQIHRLEDWGRRQLAYPINKIHKAHYILMNVECGQSTLDELEELFRYNDAIIRNLIIRREHAITEESLLAKSAEEKRARKAQREEAQQVAQEAE |
| 30S ribosomal protein S7 | G | 156 | Acinetobacter Baumannii (Strain Ab0057) | MPRRRVVAAREILPDPKFSSQTIAKFMNHVMQDGKKSIAESIVYGALERVQEKNKVDPVEFFETTLEKVRPMVEVKARRVGGATYQVPMEVRPSRRTALAMRWLVDAAAKRSEKTMALRLAGELLDAAEGKGAAIKKREDVHRMAEANKAFSHYRF |
| 30S ribosomal protein S8 | H | 131 | Acinetobacter Baumannii (Strain Ab0057) | MSMQDTVADMLTRVRNAQMAKKQTVSMPSSKLKVAIANVLQQEGYISNVEVAQEETKSTLTITLKYFEGKPVIEMVKRVSRPGLRQYRGKDKLPSVKQGLGIAIVSTSKGIMTDRAARAAGIGGEVIAFVS |
| 30S ribosomal protein S9 | I | 128 | Acinetobacter Baumannii (Strain Ab0057) | MATNYGTGRRKTATARVFLSAGTGKLVINNRTLEQYFGRETARMVVRQPLELLEATEKYDLYITVKGGGIGGQAGAIRHGITRALIAADETLKPVLRQAGFVTRDAREVERKKLGLRKARKRPQFSKR |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2021-03-22 Deposition Author(s): Morgan, C.E. , Yu, E.W.