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FASTA Sequence PDB Format mmCIF Format
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7LLK

Cryo-em structure of q23.17_ds-sosip in complex with glycan276-dependent broadly neutralizing antibody 179nc75 fab

PDB DOI: 10.2210/pdb7llk/pdb

Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1

Deposited: 2021-02-04
Deposition Author(s): Acharya, P. , Manne, K.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.8 Å

7llk
Literature

Cryo-em structure of q23.17_ds-sosip in complex with glycan276-dependent broadly neutralizing antibody 179nc75 fab

Acharya, P. , Manne, K.

Primary Citation of Related Structures: 7LLK


Proteins
Molecule Chains Sequence Length Organism Sequence
Envelope glycoprotein gp120 E 474 Homo Sapiens , Human Immunodeficiency Virus 1 AENLWVTVYYGVPVWRDADTTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLDNVTEKFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLHCTNVTSVNTTGDREGLKNCSFNMTTELRDKRQKVYSLFYRLDIVPINENQGSEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDEGFNGTGLCKNVSTVQCTHGIKPVVSTQLLLNGSLAEKNITIRSENITNNAKIIIVQLVQPVTIKCIRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSRSRWNKTLQEVAEKLRTYFGNKTIIFANSSGGDLEITTHSFNCGGEFFYCNTSGLFNSTWYVNSTWNDTDSTQESNDTITLPCRIKQIINMWQRAGQCMYAPPIPGVIKCESNITGLLLTRDGGKDNNVNETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVERRRRRR
Envelope glycoprotein gp120 A 474 Homo Sapiens , Human Immunodeficiency Virus 1 AENLWVTVYYGVPVWRDADTTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLDNVTEKFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLHCTNVTSVNTTGDREGLKNCSFNMTTELRDKRQKVYSLFYRLDIVPINENQGSEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDEGFNGTGLCKNVSTVQCTHGIKPVVSTQLLLNGSLAEKNITIRSENITNNAKIIIVQLVQPVTIKCIRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSRSRWNKTLQEVAEKLRTYFGNKTIIFANSSGGDLEITTHSFNCGGEFFYCNTSGLFNSTWYVNSTWNDTDSTQESNDTITLPCRIKQIINMWQRAGQCMYAPPIPGVIKCESNITGLLLTRDGGKDNNVNETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVERRRRRR
Envelope glycoprotein gp120 I 474 Homo Sapiens , Human Immunodeficiency Virus 1 AENLWVTVYYGVPVWRDADTTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLDNVTEKFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLHCTNVTSVNTTGDREGLKNCSFNMTTELRDKRQKVYSLFYRLDIVPINENQGSEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDEGFNGTGLCKNVSTVQCTHGIKPVVSTQLLLNGSLAEKNITIRSENITNNAKIIIVQLVQPVTIKCIRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSRSRWNKTLQEVAEKLRTYFGNKTIIFANSSGGDLEITTHSFNCGGEFFYCNTSGLFNSTWYVNSTWNDTDSTQESNDTITLPCRIKQIINMWQRAGQCMYAPPIPGVIKCESNITGLLLTRDGGKDNNVNETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVERRRRRR
Envelope glycoprotein gp41 F 153 Homo Sapiens , Human Immunodeficiency Virus 1 AVGIGAVFLGFLGAAGSTMGAASNTLTVQARQLLSGIVQQQNNLPRAPEAQQHLLKLTVWGIKQLQARVLAVERYLEVQQLLGIWGCSGKLICCTNVPWNSSWSNKSLDEIWNNMTWLQWDKEINNYTQLIYRLIEESQFQQEINEVELLALD
Envelope glycoprotein gp41 B 153 Homo Sapiens , Human Immunodeficiency Virus 1 AVGIGAVFLGFLGAAGSTMGAASNTLTVQARQLLSGIVQQQNNLPRAPEAQQHLLKLTVWGIKQLQARVLAVERYLEVQQLLGIWGCSGKLICCTNVPWNSSWSNKSLDEIWNNMTWLQWDKEINNYTQLIYRLIEESQFQQEINEVELLALD
Envelope glycoprotein gp41 J 153 Homo Sapiens , Human Immunodeficiency Virus 1 AVGIGAVFLGFLGAAGSTMGAASNTLTVQARQLLSGIVQQQNNLPRAPEAQQHLLKLTVWGIKQLQARVLAVERYLEVQQLLGIWGCSGKLICCTNVPWNSSWSNKSLDEIWNNMTWLQWDKEINNYTQLIYRLIEESQFQQEINEVELLALD
179NC75 Fab Heavy chain G 238 Homo Sapiens , Human Immunodeficiency Virus 1 EMRLEESGGALVKPGGSLRLSCVASGFKLSEWSLMWVRQAPGKGLQWVSSISLNQDYISYAGSVRGRFDVFRDRTQTSLLLNMNKLKTEDTGVYFCARVHAWRYFDWVNRRSPVEKVLSIDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK
179NC75 Fab Heavy chain C 238 Homo Sapiens , Human Immunodeficiency Virus 1 EMRLEESGGALVKPGGSLRLSCVASGFKLSEWSLMWVRQAPGKGLQWVSSISLNQDYISYAGSVRGRFDVFRDRTQTSLLLNMNKLKTEDTGVYFCARVHAWRYFDWVNRRSPVEKVLSIDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK
179NC75 Fab Heavy chain K 238 Homo Sapiens , Human Immunodeficiency Virus 1 EMRLEESGGALVKPGGSLRLSCVASGFKLSEWSLMWVRQAPGKGLQWVSSISLNQDYISYAGSVRGRFDVFRDRTQTSLLLNMNKLKTEDTGVYFCARVHAWRYFDWVNRRSPVEKVLSIDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK
179NC75 Fab Light chain H 215 Homo Sapiens , Human Immunodeficiency Virus 1 SVTSGATQPPSVSVSKGETARITCSGVELSSQYVSWYRQRPGQSPVLVMFHNNSRASRIPERFSASDSGDTATLTIAGAQDVDEAEYYCQTWDSKNYVTFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
179NC75 Fab Light chain D 215 Homo Sapiens , Human Immunodeficiency Virus 1 SVTSGATQPPSVSVSKGETARITCSGVELSSQYVSWYRQRPGQSPVLVMFHNNSRASRIPERFSASDSGDTATLTIAGAQDVDEAEYYCQTWDSKNYVTFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
179NC75 Fab Light chain L 215 Homo Sapiens , Human Immunodeficiency Virus 1 SVTSGATQPPSVSVSKGETARITCSGVELSSQYVSWYRQRPGQSPVLVMFHNNSRASRIPERFSASDSGDTATLTIAGAQDVDEAEYYCQTWDSKNYVTFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2021-02-04
Deposition Author(s): Acharya, P. , Manne, K.