Cryo-em structure of bg505 ds-sosip in complex with glycan276-dependent broadly neutralizing antibody vrc33.01 fab
PDB DOI: 10.2210/pdb7ll2/pdb
Classification: IMMUNE SYSTEM/VIRAL PROTEIN Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1
Deposited: 2021-02-03 Deposition Author(s): Acharya, P. , Manne, K.
Cryo-em structure of bg505 ds-sosip in complex with glycan276-dependent broadly neutralizing antibody vrc33.01 fab
Primary Citation of Related Structures: 7LL2
Proteins | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
Envelope glycoprotein gp120 | A | 473 | Homo Sapiens , Human Immunodeficiency Virus 1 | AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRV |
Envelope glycoprotein gp120 | C | 473 | Homo Sapiens , Human Immunodeficiency Virus 1 | AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRV |
Envelope glycoprotein gp120 | E | 473 | Homo Sapiens , Human Immunodeficiency Virus 1 | AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRV |
Envelope glycoprotein gp41 | B | 153 | Homo Sapiens , Human Immunodeficiency Virus 1 | AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAIEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD |
Envelope glycoprotein gp41 | D | 153 | Homo Sapiens , Human Immunodeficiency Virus 1 | AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAIEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD |
Envelope glycoprotein gp41 | F | 153 | Homo Sapiens , Human Immunodeficiency Virus 1 | AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAIEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD |
VRC33.01 Fab Heavy chain | H | 225 | Homo Sapiens , Human Immunodeficiency Virus 1 | QVQLQQWGAGLLKPSETLSLTCALYGRSLNGNYWSWIRQSPGKGLEWIGEINHSGSTYFNPSFKSRVAMSVDTSKSQFSLKLNSVTAADTGIYFCARGKRYSASYSNYFGVWGQGTQVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC |
VRC33.01 Fab Heavy chain | I | 225 | Homo Sapiens , Human Immunodeficiency Virus 1 | QVQLQQWGAGLLKPSETLSLTCALYGRSLNGNYWSWIRQSPGKGLEWIGEINHSGSTYFNPSFKSRVAMSVDTSKSQFSLKLNSVTAADTGIYFCARGKRYSASYSNYFGVWGQGTQVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC |
VRC33.01 Fab Heavy chain | K | 225 | Homo Sapiens , Human Immunodeficiency Virus 1 | QVQLQQWGAGLLKPSETLSLTCALYGRSLNGNYWSWIRQSPGKGLEWIGEINHSGSTYFNPSFKSRVAMSVDTSKSQFSLKLNSVTAADTGIYFCARGKRYSASYSNYFGVWGQGTQVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC |
VRC33.01 Fab Light chain | L | 217 | Homo Sapiens , Human Immunodeficiency Virus 1 | DIQMTQSPSTLSASVGDRVDITCRASQSISRWLAWYQQKPGKAPKVLIYEASLLANGVPSRFSGHFNGRESATDFTLTISSLQPDDVATYYCQHYMADPRFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
VRC33.01 Fab Light chain | J | 217 | Homo Sapiens , Human Immunodeficiency Virus 1 | DIQMTQSPSTLSASVGDRVDITCRASQSISRWLAWYQQKPGKAPKVLIYEASLLANGVPSRFSGHFNGRESATDFTLTISSLQPDDVATYYCQHYMADPRFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
VRC33.01 Fab Light chain | M | 217 | Homo Sapiens , Human Immunodeficiency Virus 1 | DIQMTQSPSTLSASVGDRVDITCRASQSISRWLAWYQQKPGKAPKVLIYEASLLANGVPSRFSGHFNGRESATDFTLTISSLQPDDVATYYCQHYMADPRFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
Method: ELECTRON MICROSCOPY
Deposited Date: 2021-02-03 Deposition Author(s): Acharya, P. , Manne, K.