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7KN3

Crystal structure of sars-cov-2 spike protein receptor-binding domain complexed with a pre-pandemic antibody s-b8 fab

PDB DOI: 10.2210/pdb7kn3/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2020-11-04
Deposition Author(s): Liu, H. , Wilson, I.A. , Zhu, X.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.251 Å

7kn3
Literature

Crystal structure of sars-cov-2 spike protein receptor-binding domain complexed with a pre-pandemic antibody s-b8 fab

Liu, H. , Wilson, I.A. , Zhu, X.

Primary Citation of Related Structures: 7KN3


Proteins
Molecule Chains Sequence Length Organism Sequence
Spike protein S1 A 231 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 RVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFSGHHHHHH
Spike protein S1 B 231 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 RVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFSGHHHHHH
S-B8 Fab heavy chain H 219 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLVQSGGGLIQPGGSLRLSCAASGFTVSLSHMNWVRQAPGKGLEWVSITYGDGNSDYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAREYYYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
S-B8 Fab heavy chain M 219 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLVQSGGGLIQPGGSLRLSCAASGFTVSLSHMNWVRQAPGKGLEWVSITYGDGNSDYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAREYYYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
S-B8 Fab light chain L 221 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSLPLTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECS
S-B8 Fab light chain N 221 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSLPLTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECS
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2020-11-04
Deposition Author(s): Liu, H. , Wilson, I.A. , Zhu, X.