7K6P
Active state dot1 bound to the unacetylated h4 nucleosome
PDB DOI: 10.2210/pdb7k6p/pdb
Classification: Structural Protein/DNA/Transferase Organism(s): Homo Sapiens , Saccharomyces Cerevisiae , Xenopus Laevis , Synthetic Construct
Deposited: 2020-09-21 Deposition Author(s): Armache, J.-P. , Armache, K.-J. , Boeke, J.D. , De Ioannes, P.E. , Lee, R. , Miao, W. , Truong, D.M. , Valencia-Sanchez, M.I.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.2 Å
Active state dot1 bound to the unacetylated h4 nucleosome
Armache, J.-P. , Armache, K.-J. , Boeke, J.D. , De Ioannes, P.E. , Lee, R. , Miao, W. , Truong, D.M. , Valencia-Sanchez, M.I.
Primary Citation of Related Structures: 7K6P
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Histone H3.2 | A | 98 | Homo Sapiens , Saccharomyces Cerevisiae , Xenopus Laevis , Synthetic Construct | KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFMTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGER |
| Histone H3.2 | E | 98 | Homo Sapiens , Saccharomyces Cerevisiae , Xenopus Laevis , Synthetic Construct | KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFMTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGER |
| Histone H4 | B | 90 | Homo Sapiens , Saccharomyces Cerevisiae , Xenopus Laevis , Synthetic Construct | GGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
| Histone H4 | F | 90 | Homo Sapiens , Saccharomyces Cerevisiae , Xenopus Laevis , Synthetic Construct | GGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
| Histone H2A type 1 | C | 107 | Homo Sapiens , Saccharomyces Cerevisiae , Xenopus Laevis , Synthetic Construct | AKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPK |
| Histone H2A type 1 | G | 107 | Homo Sapiens , Saccharomyces Cerevisiae , Xenopus Laevis , Synthetic Construct | AKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPK |
| Histone H2B 1.1 | D | 93 | Homo Sapiens , Saccharomyces Cerevisiae , Xenopus Laevis , Synthetic Construct | TRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTCYTSA |
| Histone H2B 1.1 | H | 93 | Homo Sapiens , Saccharomyces Cerevisiae , Xenopus Laevis , Synthetic Construct | TRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTCYTSA |
| Histone-lysine N-methyltransferase, H3 lysine-79 specific | K | 406 | Homo Sapiens , Saccharomyces Cerevisiae , Xenopus Laevis , Synthetic Construct | SSTFVDWNGPCLRLQYPLFDIEYLRSHEIYSGTPIQSISLRTNSPQPTSLTSDNDTSSVTTAKLQSILFSNYMEEYKVDFKRSTAIYNPMSEIGKLIEYSCLVFLPSPYAEQLKETILPDLNASFDNSDTKGFVNAINLYNKMIREIPRQRIIDHLETIDKIPRSFIHDFLHIVYTRSIHPQANKLKHYKAFSNYVYGELLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLRSLTYQINFYNVENIFNRLKVQRYDLKEDSVSWTHSGGEYYISTVMEDVDESLFSPAARGRRNRGTPVKYM |
| Ubiquitin | L | 76 | Homo Sapiens , Saccharomyces Cerevisiae , Xenopus Laevis , Synthetic Construct | MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGC |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (146-MER) | i | 146 | NA | TCGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGGATTCTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCGAT |
| DNA (146-MER) | j | 146 | NA | ATCGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGAGAATCCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCGA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2020-09-21 Deposition Author(s): Armache, J.-P. , Armache, K.-J. , Boeke, J.D. , De Ioannes, P.E. , Lee, R. , Miao, W. , Truong, D.M. , Valencia-Sanchez, M.I.