7JX3
Mapping neutralizing and immunodominant sites on the sars-cov-2 spike receptor-binding domain by structure-guided high-resolution serology
PDB DOI: 10.2210/pdb7jx3/pdb
Classification: VIRAL PROTEIN/IMMUNE SYSTEM Organism(s): Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2
Deposited: 2020-08-26 Deposition Author(s): Beltramello, M. , Cameroni, E. , Corti, D. , Czudnochowski, N. , Nix, J.C. , Park, Y.J. , Pinto, D. , Rosen, L.E. , Seattle Structural Genomics Center For Infectious Disease (Ssgcid) , Snell, G. , Tortorici, M.A. , Veesler, D. , Walls, A.C.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.65 Å
Mapping neutralizing and immunodominant sites on the sars-cov-2 spike receptor-binding domain by structure-guided high-resolution serology
Beltramello, M. , Cameroni, E. , Corti, D. , Czudnochowski, N. , Nix, J.C. , Park, Y.J. , Pinto, D. , Rosen, L.E. , Seattle Structural Genomics Center For Infectious Disease (Ssgcid) , Snell, G. , Tortorici, M.A. , Veesler, D. , Walls, A.C.
Primary Citation of Related Structures: 7JX3
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Light chain of Fab domain of monoclonal antibody S309 | B | 214 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 | EIVLTQSPGTLSLSPGERATLSCRASQTVSSTSLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQHDTSLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
| Heavy chain of Fab domain of monoclonal antibody S309 | A | 230 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 | QVQLVQSGAEVKKPGASVKVSCKASGYPFTSYGISWVRQAPGQGLEWMGWISTYNGNTNYAQKFQGRVTMTTDTSTTTGYMELRRLRSDDTAVYYCARDYTRGAWFGESLIGGFDNWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC |
| Light chain of Fab domain of monoclonal antibody S2H14 | D | 216 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 | NFMLTQPHSVSESPGKTVTISCTRSSGSIASNYVQWYQQRPGSSPTTVIYEDNQRPSGVPDRFSGSIDSSSNSASLTISGLKTEDEADYYCQSYDSSNQVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS |
| Heavy chain of Fab domain of monoclonal antibody S2H14 | C | 229 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 | EVQLVESGGGLVKPGGSLRLSCAASGFTFSNAWMSWVRQAPGKGLEWVGRIKSKTDGGTTDYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYCTTGSETYYYDSSGPFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC |
| Light chain of Fab domain of monoclonal antibody S304 | L | 215 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 | DIEMTQSPSSLSAAVGDRVTITCRASQSIGSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFAIYYCQQSYVSPTYTFGPGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
| Heavy chain of Fab domain of monoclonal antibody S304 | H | 223 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 | EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYDMHWVRQTTGKGLEWVSTIGTAGDTYYPDSVKGRFTISREDAKNSLYLQMNSLRAGDTAVYYCARGDSSGYYYYFDYWGQGTLLTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC |
| Spike protein S1 | R | 204 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 | RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKST |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2020-08-26 Deposition Author(s): Beltramello, M. , Cameroni, E. , Corti, D. , Czudnochowski, N. , Nix, J.C. , Park, Y.J. , Pinto, D. , Rosen, L.E. , Seattle Structural Genomics Center For Infectious Disease (Ssgcid) , Snell, G. , Tortorici, M.A. , Veesler, D. , Walls, A.C.