7F5H
The crystal structure of rbd-nanobody complex, dl28 (sc4)
PDB DOI: 10.2210/pdb7f5h/pdb
Classification: VIRAL PROTEIN Organism(s): Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos
Deposited: 2021-06-22 Deposition Author(s): Lai, Y. , Li, D. , Li, T. , Luo, Z.P. , Tan, J. , Zhou, Y.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 3 Å
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| SARS-CoV-2 Spike Receptor-Binding Domain (RBD) | A | 213 | Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos | AGSPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTGTLEVLFQ |
| SARS-CoV-2 Spike Receptor-Binding Domain (RBD) | B | 213 | Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos | AGSPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTGTLEVLFQ |
| Nanobody DL28 | C | 143 | Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos | GSSSQVQLQESGGGLVQAGGSLRLSCAASGSDFSSSTMGWYRQAPGKQREFVAISSEGSTSYAGSVKGRFTISRDNAKNTVYLQMNSLEPEDTAVYYCNVVDRWYDYWGQGTQVTVSAGRAGEQKLISEEDLNSAVDHHHHHH |
| Nanobody DL28 | D | 143 | Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos | GSSSQVQLQESGGGLVQAGGSLRLSCAASGSDFSSSTMGWYRQAPGKQREFVAISSEGSTSYAGSVKGRFTISRDNAKNTVYLQMNSLEPEDTAVYYCNVVDRWYDYWGQGTQVTVSAGRAGEQKLISEEDLNSAVDHHHHHH |
Experimental Data
Method: X-RAY DIFFRACTION