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7D1T
Cryo-em structure of psii at 1.95 angstrom resolution
PDB DOI: 10.2210/pdb7d1t/pdb
Classification: PHOTOSYNTHESIS Organism(s): Thermosynechococcus Vulcanus
Deposited: 2020-09-15 Deposition Author(s): Akita, F. , Hamaguchi, T. , Kato, K. , Miyazaki, N. , Nakajima, Y. , Shen, J.R. , Yonekura, K.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 1.95 Å
Cryo-em structure of psii at 1.95 angstrom resolution
Akita, F. , Hamaguchi, T. , Kato, K. , Miyazaki, N. , Nakajima, Y. , Shen, J.R. , Yonekura, K.
Primary Citation of Related Structures: 7D1T
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Photosystem II protein D1 | A | 334 | Thermosynechococcus Vulcanus | ANLWERFCNWVTSTDNRLYVGWFGVIMIPTLLAATICFVIAFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLIIFHFLLGASCYMGRQWELSYRLGMRPWICVAYSAPLASAFAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHQLGVAGVFGGALFCAMHGSLVTSSLIRETTETESANYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGVWFAALGISTMAFNLNGFNFNHSVIDAKGNVINTWADIINRANLGMEVMHERNAHNFPLDLA |
| Photosystem II reaction center protein K | K | 37 | Thermosynechococcus Vulcanus | KLPEAYAIFDPLVDVLPVIPVLFLALAFVWQAAVGFR |
| Photosystem II reaction center protein L | L | 37 | Thermosynechococcus Vulcanus | MEPNPNRQPVELNRTSLYLGLLLILVLALLFSSYFFN |
| Photosystem II reaction center protein M | M | 34 | Thermosynechococcus Vulcanus | MEVNQLGLIATALFVLVPSVFLIILYVQTESQQK |
| Photosystem II manganese-stabilizing polypeptide | O | 244 | Thermosynechococcus Vulcanus | QTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALPQAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIEPA |
| Photosystem II reaction center protein T | T | 31 | Thermosynechococcus Vulcanus | METITYVFIFACIIALFFFAIFFREPPRITK |
| Photosystem II 12 kDa extrinsic protein | U | 97 | Thermosynechococcus Vulcanus | ELVNVVDEKLGTAYGEKIDLNNTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEHFTVTEVETALVEGGDRYNNGLYK |
| Cytochrome c-550 | V | 137 | Thermosynechococcus Vulcanus | AELTPEVLTVPLNSEGKTITLTEKQYLEGKRLFQYACASCHVGGITKTNPSLDLRTETLALATPPRDNIEGLVDYMKNPTTYDGEQEIAEVHPSLRSADIFPKMRNLTEKDLVAIAGHILVEPKILGDKWGGGKVYY |
| Photosystem II reaction center protein Ycf12 | Y | 30 | Thermosynechococcus Vulcanus | EVIAQLTMIAMIGIAGPMIIFLLAVRRGNL |
| Photosystem II reaction center protein X | X | 40 | Thermosynechococcus Vulcanus | TITPSLKGFFIGLLSGAVVLGLTFAVLIAISQIDKVQRSL |
| Photosystem II reaction center protein Z | Z | 62 | Thermosynechococcus Vulcanus | MTILFQLALAALVILSFVMVIGVPVAYASPQDWDRSKQLIFLGSGLWIALVLVVGVLNFFVV |
| Photosystem II CP47 reaction center protein | B | 505 | Thermosynechococcus Vulcanus | GLPWYRVHTVLINDPGRLIAAHLMHTALVAGWAGSMALYELATFDPSDPVLNPMWRQGMFVLPFMARLGVTGSWSGWSITGETGIDPGFWSFEGVALAHIVLSGLLFLAACWHWVYWDLELFRDPRTGEPALDLPKMFGIHLFLAGLLCFGFGAFHLTGLFGPGMWVSDPYGLTGSVQPVAPEWGPDGFNPYNPGGVVAHHIAAGIVGIIAGLFHILVRPPQRLYKALRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDSSYFQQEINRRVQASLASGATLEEAWSAIPEKLAFYDYIGNNPAKGGLFRTGPMNKGDGIAQAWKGHAVFRNKEGEELFVRRMPAFFESFPVILTDKNGVVKADIPFRRAESKYSFEQQGVTVSFYGGELNGQTFTDPPTVKSYARKAIFGEIFEFDTETLNSDGIFRTSPRGWFTFAHAVFALLFFFGHIWHGARTLFRDVFSGIDPELSPEQVEWGFYQKVGDVTTRK |
| Photosystem II protein Y | R | 34 | Thermosynechococcus Vulcanus | DWRVLVVLLPVLLAAGWAVRNILPYAVKQVQKLL |
| Photosystem II CP43 reaction center protein | C | 451 | Thermosynechococcus Vulcanus | ATNRDQESSGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMTLFELAHFIPEKPMYEQGLILIPHIATLGWGVGPGGEVVDTFPFFVVGVVHLISSAVLGFGGVYHAIRGPETLEEYSSFFGYDWKDKNKMTTILGFHLIVLGIGALLLVAKAMFFGGLYDTWAPGGGDVRVITNPTLDPRVIFGYLLKSPFGGEGWIVSVNNLEDVVGGHIWIGLICIAGGIWHILTTPFGWARRAFIWSGEAYLSYSLGALSMMGFIATCFVWFNNTVYPSEFYGPTGPEASQAQAMTFLIRDQKLGANVGSAQGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLNKIKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINSVNFVSPRSWLATSHFVLAFFFLVGHLWHAGRARAAAAGFEKGIDRESEPVLSMPSLD |
| Photosystem II D2 protein | D | 342 | Thermosynechococcus Vulcanus | ERGWFDILDDWLKRDRFVFVGWSGILLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLLLLWGPEAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQFEIARLVGVRPYNAIAFSAPIAVFVSVFLIYPLGQSSWFFAPSFGVAAIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENTLFQDGEGASTFRAFNPTQAEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAWMAPQDQPXENFVFPEEVLPRGNAL |
| Cytochrome b559 subunit alpha | E | 81 | Thermosynechococcus Vulcanus | TTGERPFSDIITSVRYWVIHSITIPALFIAGWLFVSTGLAYDVFGTPRPDSYYAQEQRSIPLVTDRFEAKQQVETFLEQLK |
| Cytochrome b559 subunit beta | F | 34 | Thermosynechococcus Vulcanus | SYPIFTVRWVAVHTLAVPTIFFLGAIAAMQFIQR |
| Photosystem II reaction center protein H | H | 63 | Thermosynechococcus Vulcanus | ARRTWLGDILRPLNSEYGKVAPGWGTTPLMAVFMGLFLVFLLIILEIYNSTLILDGVNVSWKA |
| Photosystem II reaction center protein I | I | 36 | Thermosynechococcus Vulcanus | METLKITVYIVVTFFVLLFVFGFLSGDPARNPKRKD |
| Photosystem II reaction center protein J | J | 37 | Thermosynechococcus Vulcanus | EGGRIPLWIVATVAGMGVIVIVGLFFYGAYAGLGSSL |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2020-09-15 Deposition Author(s): Akita, F. , Hamaguchi, T. , Kato, K. , Miyazaki, N. , Nakajima, Y. , Shen, J.R. , Yonekura, K.