6YWS
The structure of the large subunit of the mitoribosome from neurospora crassa
PDB DOI: 10.2210/pdb6yws/pdb
Classification: TRANSLATION Organism(s): Neurospora Crassa Or74A
Deposited: 2020-04-30 Deposition Author(s): Amunts, A. , Itoh, Y. , Naschberger, A.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.74 Å
The structure of the large subunit of the mitoribosome from neurospora crassa
Amunts, A. , Itoh, Y. , Naschberger, A.
Primary Citation of Related Structures: 6YWS
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 60S ribosomal protein L20 | A | 225 | Neurospora Crassa Or74A | MEASLSLFRPVATCCRRVALSSSSSSSQKAAAVAGISVRYQSTANRTKRMLNIPPHESFLNVPVEGDRIIFNPPSSEASVYHTPFKFLPRSDPRRRANIYKLFKPPQAPITTPESSSTDAAAADQHGDLPPVLYNPTKSYNVTPEQVEEIRELRAKDPKKYSVTYLSNKYNCTKVFIMMCTQAPREHQEQHKLARARTAENWGPRRAAAKLDARRRKEMLHRGEI |
| Mitochondrial ribosomal protein L44 | H | 98 | Neurospora Crassa Or74A | MLTRFITDVSTRFNPFSAKAKAARLFLSFLPPNARSNGMNITTQLLPRNSTETPLLYVKFKDGKEMNLDVENMGIKSIVEEVDRHSRILQKQADLNDG |
| Uncharacterized protein | I | 218 | Neurospora Crassa Or74A | MICRTCLRRASGFARPAAAAATRPMVAASSRAAFSTTFSVCTPPAATPAAAAPATSTAEAGLAPVPGAATTEQAKAAISSCPAGTKLNGLNYFKNKADPVALPDEEYPEWLWRCLEVQKKTDDAADADAGDEFSKSKKQRRLAMKRARAQEAKILASGDLEALAPKIPLQKQSVNLPGAVNGGVQDAVLADEKREELRKAMRKERKAKIKESNYLKAM |
| L51_S25_CI-B8 domain-containing protein | J | 201 | Neurospora Crassa Or74A | MVGVIRRLNVVRELLNIRAGPGAALLPKEVTKVHMQFAHRIEEGHMGPRKFWRENLPKLKYWNPAVPMVINRTTDQKGPAVMTIYFRDDKDAKPSSTPFPTSSADGSSPAPKPAQGERIVTIDMKNRNSSVILKEFLDKTGAVAVQPTAKDEEEFREFEDLHRRSEIDRERIRKMNDAKKREKAMLAKAMSDAQSIKAASA |
| 60S ribosomal protein L16 | K | 249 | Neurospora Crassa Or74A | MKHNASSALLSAFQGLRISSSATPFRAASLATSAVRRPIAPTPVSVASHVRLFSATAIQAGSWLEPNLNRKKKMMKGRPRVPTGGSTKGTTVVWGDYGLRMRDHHRRISAQQLKLAEDTIKQRLRGQKYRLYKRVACNVGVYVSGNEMRMGKGKGSFDHWATRVAVNQIIFEIRGQLHEQVIRDAFRLAGHKLPGLYEFVKKGDPPVVGITKLEDGLTVEDLKNPRKKLLMPEITQSAASTSSTAAPPS |
| 50S ribosomal protein L17 | L | 193 | Neurospora Crassa Or74A | MAGAHVKYRHLSRSSAHRQALLRNLVTSLIKNETIHTTYPKAKEAQRLAEKLITLSKRDTETARRSAQGILYTPDQLLPKLFGEIRERYANRPGGYTRVLRTEPKDQYSQAPSAILELVDGPKDMRFAMTAATVARDREQKTESTDLTKKNMDKVTRFRKDGMRAFEDMVASLRDMKFTAGAINPKEWKKLDR |
| Mitochondrial ribosomal protein | M | 258 | Neurospora Crassa Or74A | MNVTASLSRRPLGCLKAGLCQSLIRGYATAVAASTTQSTGALPDHNFFRIADKHTKKTRTAFAVFTPPKSPTTLPPSSVVTKSKAFKIANSKLPPLMTKPPSDPMPLLTQQQIARMDPTGARTALFSKARHAARVGDVLMVTHRRGGEPFAGVCLAIRRSGIDTAILLRNHLGKVGVEMWYKIYNKNVAGIEIIKRRAKRARRAKLMYMRQPKHDMGSVEQYVFAWKKMRKVLSSKGLTGGVGGGGGKQKGQESKKKN |
| Aconitate hydratase | N | 217 | Neurospora Crassa Or74A | MSRALLRSVLELRTPVTRLPPSFLLPFRPAARFLHQTAQQVEPTSQSDAAAAAATLLKASPPKVTTATTPEAPAAVPTSTPFSQQPPISQQVKELLPVLAAQPGHYTTIHIHGKPYLVTEGDTVKLPFKMPGVAPGDVLRLNRASVIGSRDLTLQGAPYVDERLFECRAIVMGTESEPMRVMIKKKRRCRKKKHVFSKHKYTVLRINQLKINDVSSL |
| Mitochondrial large ribosomal subunit | O | 364 | Neurospora Crassa Or74A | MSLNVPSRRLLKSAPSSANALVPALQSLSINTRSIHTTPSQQWSLFGWGKQKVEERNKVKEELKQSELARTRKPTQEEIFERVRGRLEGDSIFADTTPSSQLAAEQDKHKDWATASAEKKLAAAHAKDQTPTGISLKKDHLVRVVDPDPRSRVRWERKMVIRKLQRGTDPWSVEPKAERIARTERKLVYKTGYLPTSVKKLVHLSRQIRGKTVSEALVQMQFSKKKMAKEVKTELLRAEAKAIVTRGMGLGKAAAAAAQKETGAEPVKIQTKDGKHLEIRDPTRIYVAETFVNKGFTRGVELDYRARGRVFKMNKPTTTMTVVLKEEKTRIREHQERVAKKLRQGPWVHLPDRPVTSQRQFYSW |
| Mitochondrial ribosomal protein subunit L23 | P | 228 | Neurospora Crassa Or74A | MASVAKTGAEALRNAPFRVGKKQIFLPNHVITFVRPLPKQPPNLATFIVPLEFNKLDLRDYLYHVYNVEVTGVRSFVNQRMHEQRHGDVGNWRRPKSQKMMIAELAKPFVWPKPPAEDAREAFDYAMWKKQKTAQEQDTKFQGIRAQGEVVPPSQFEVTKDRKAIKARQSKFLSGEETWAPGKVNAFLNSKIVPEEEGWSEVEENLPLDESAESAAEESSSKGSETRQ |
| KOW domain-containing protein | Q | 396 | Neurospora Crassa Or74A | MDKLLRRVRMAEGMVARRAQRKNALLKRITERKQNKKNGEAFTEAIQQRKAAVEARNEDWMLGPLAPRRELDEITLSNGNFFGSLSPTRALLESEVSEEERKARVAWCGSPKFLCIAPGDRVVVIEGHHKDLIGTIEKLNTRNMTVEIQSEKLKTNTTVPQFMQNDADKPVTQIYARLPISSVRLVHPLKDPQTGEYRDVIIRELRPRNIVHDRPTRTRSMRRFVPGENIIIPWPKQEPIKREDQPADTLRIDVDEKTFVPTLFRPPAPQQVLDELRNKYSIFRTRHTPEYIAKKEQEEQEKEAKKSAAKAMLTPVQEYNRKQRELRRARGQPALTEEMLAKIGEVVARNKLGHHQAPKVKEETVAQIEKAVEQLSLGGGQEDAATTTSPEQPKVV |
| Mitoc_mL59 domain-containing protein | B | 162 | Neurospora Crassa Or74A | AATVKQHVQLALSLPPRLRTFLARYPPASILPAGADPETHKTPYQEESPNPFMPTKHPITGKWHNPKYSLRRQAELVKLAQEHGVEELLPFTRKLNEEKLRKRVELGLRVKGTGVGEKVKGHKHERTLVAKMEKRREAMLAMPDLIREWKKVGKRNWTKFPK |
| Uncharacterized protein | R | 447 | Neurospora Crassa Or74A | MHLAQLRQPLTRAAANSCHSVCRLPTTHSSVSATAILSEQFAHLRIGPSSSNVAVEGRRYASVKAQGAYRLKPKRTIPKKLGAKKTGDQYVIPGNIIYKQRGTLWHPGENTIMGRDHTIHAAVAGYVKYYRDPQLHPDRQYIGVVFNRNDKLPYPKDAPRKRKLGLVAVPRKVEEVEKPTMSASGLPLFVTRHETIEIPPPAVTTPAAAGKAVKGQGARVSASGAAAVPASSSTISASASSNSNNGGSSVIAELIKEKLAARAEYNARQSALRKLQQQKMLARRGTRVLRLMNNYSYRETNWEIGRLIGDPGSVPGTEKVGSRKAKFRARRRRRNTFLLGIKERKLAKADRREEYRRRVREKREQRLVQRKEFLAKQREAKKAREGGAAAEKSEKKEVKAEKPAAAAPKVEKPKAPEAAKKESKPKVEEKKAAAAEPKKDSKTEKKD |
| 50S ribosomal protein L24 | S | 274 | Neurospora Crassa Or74A | MSSFLVRPFCLRATTTTTTTTTTTALVQQQLRALTTTTALTYHQPRVPSSAIPIPNVSGRVPLPDSTPVPEDFKIEIPSYPYGPRRVYHQSNTGLYGSALIRFGNNVSKRNEIKTRRKWRPNVQQKRLWSKSLGVFVRTRVTTRVLRTIDKVGGLDEYLLGHKAARVKELGPWGWMLRWRIMQTPEIRERFAKEREALGLPPRREEDEEKSLEEQLREFQVAGIQFAEGKAPKTKGQLKEEADRLIKKSETEEFGLGQEEDLFMKEEPKPTKMA |
| 54S ribosomal protein L4, mitochondrial | T | 263 | Neurospora Crassa Or74A | MASPAALRPSMGAIMQTCRSAATAPKVAVAVPVRALSTSAALLKRHKYPTARVTRDNSKQRGESALRKSGTRWKLSVSDEPLPEPVPREELPPIQVDENHGLWDFFYDRETVAMAPLEHTKHGRAWTVSELRKKSWDDLHRLWWVCVKERNRIATANWERTKSELGFGLAEANERDRNVKQTMRGIKHVLTERFYAWEDAVKLAEQDPEIDLSNPENPYTPSTFLEAEETAEGAEASETQSTTTEIDPTTIPSSKSQAEAPRV |
| 50S ribosomal protein L30 | U | 161 | Neurospora Crassa Or74A | MSFFRITLHRSAIGLPKRTHGVLAALGLRRRNQTVFHPVEPQFAGMLMKVKELVRVEEVPHRLTKRELKDERKPDAGFVVEKQVRRFIPGVGVQDEVDFSKVVEELKAQKVENVEGVEKMVVEGGAVVRDGKRAGDLGVRTRSDWEVIGKMKSVLPKVKAL |
| Uncharacterized protein | V | 219 | Neurospora Crassa Or74A | MSSKLPTTLLRRPSALPSTTTYTAYSASRPTPPSCTAHGAQGQQIRNATFVPRHRRPYQFTQLVQLSDGSTFTVRTTMPTALYKSAKDSRNHLLWQPSDKSLKNVELDEAGKLAAFRERYGRGWDLDAKMTPEEEAAAAAALAAGGGAGVPGGKAAKKAAEEALLAKKKKEEEEAAKKAAEAEEADPFDSLTDLISGYATENMNPGLNFKETRHYGKKK |
| Mitochondrial ribosomal protein subunit L32 | W | 129 | Neurospora Crassa Or74A | MAAMTAAAAAPAMRLFNPSTFFQTLRTQRFGVPALNFAVPAAAISLLPSIPSLLEDIWEGILRAVPKKKTSHMKKRHRQMAGKALKDVTHLNRCPACGNLKRMHHLCSTCLGKLKGFMDRNGGSNAKAY |
| Uncharacterized protein | X | 59 | Neurospora Crassa Or74A | MAKKAKSRIINVRLISMAMTGYFYTFTRPRTSLPMSMLKYDPIVRRKVLFLEQKRKGRS |
| Related to ribosomal protein L34, mitochondrial | Y | 140 | Neurospora Crassa Or74A | MSRIFSSALQAVFKPSAFLPKTATRSFSILPSLRPATLSSTPSTIFRAPNAITAPSASPSATTGIDGEVLDLLSASSLISSHPALSGLGSQIRCGPRPTMSGATRLVQKRRHGFLSRVKTKNGQKTLKRRLAKGRLRLSA |
| Ribosomal protein | 0 | 124 | Neurospora Crassa Or74A | MSNLFRSLASSMRALSLAAPRATAVNTTKTVVSTHQTRCLSQGLLSRHICTPMCSHNRPVAVCQSAKNGLQSKQQSRGMKVHSAIKKRCEHCKVVRRKANKRQNGYLYIICPANPRHKQRQGYR |
| Mitochondrial large ribosomal subunit YmL35 | 1 | 449 | Neurospora Crassa Or74A | MSTCQQVARPLVRCLRQTGPGAATCSTRSVAVAAVRPFSSTPMRKEEGATTTTTTSPVDSTTTPPPLPSATEAKATVADTVVGGPELGSRRRRAALATTGNLPFEQLPYQCFQDARKILQQDRAAKIAQIVKETEKIKLIEARDASEFEGGEAAKQTRIKSLRKYIEELKILADINDPEVKRRFEDGRGDMTKPVYRFMAERRWRSMDYKIIAQRISQFHVVPDLLPAFDPTMDVKLSFRGYQVSPGAILDSRVTEVAPTLRMQVFDKGERLLTVVVIDSDVPDVTHDNFKRRCHFLAANIPWDPSKTVLSLRSVGDRVEGDVGKPWLPPFAQKGSPYHRLNVFVLEQKPGAKIDGEALKKHLENRENFSLKGFREKFDLEPVGFNLFRSEWDEGTAEVMERHGIPGAEVEFKRQKFASLKPPRKARGWEAKRQKPKYKSLWKYVKRIA |
| 54S ribosomal protein L31, mitochondrial | C | 110 | Neurospora Crassa Or74A | MFGAFRFTNPLSGGLLWKIPWRMSKFQKLRQRRRLRAVDNVVATIENALAKKGETVKAVERWRAEMPTEAEMLPKDKYTIFDRKEKRYRKGIHKLPKWTRVSQRVNPPGY |
| Uncharacterized protein | 2 | 370 | Neurospora Crassa Or74A | MVSATKKPVSAMSAKNSTRHRKVSHKVTKTIATAKSQVISNKAMKIRTKSWKDMPSPKRRRRINAMVDELRLQGNVKMPKPGKSTYKAGGGERVRLVKAASTLPTPPLTPPVLSKPTGSASQSKGDLKPKRPTPEKKRSVSKRDVERFFLSTQTSTRRRENTPIHAPIMSSTFTSLRGLATRLFAGGARPSPSSLLLPNKPATAALPTAIQHQQTASYASKGKSGPPAGMFSGQKAGSKKSKGPKQVDPRIINILRHFAVLSPKRIPPPLRFGRNRYLRHWTIHRAWLLFRRQQREQRERILMQQHQSMSNACEELRNTEGPGTRETGYLYRVAMLKNGVYGLKSIPIEYASRALVETPGRQAWNHEWKR |
| Uncharacterized protein | 3 | 103 | Neurospora Crassa Or74A | MQPTRILQGLKYRKLRLTTKDVNKGFYKGNRTGSMGTHTSYGTYKIDYTKVRTYVCPDLTGFKLTPFVSKTIRPVHDQFPGDKLGPKNPATYLARWKSENGLD |
| Mitochondrial ribosomal protein L43 | 4 | 138 | Neurospora Crassa Or74A | MTVKALTQISSAGRNGVGAFVLQCKKLDIHYSDWAGSSRGMNGFIKSLLPKFAAANPQIEFVVSPRPAKHPILMGHYINGRTKAICVRNMEPLEILKKAELLRDASGEKPQKFKKPVTSTNPSVRGVWSPYHGQGMAV |
| 60S ribosomal protein L3 | 5 | 439 | Neurospora Crassa Or74A | MKRIATPSLTSRLLVAARSGVSPATAAIRSRSAISVRSQSTAALAQHDASHDLNNDRFPPLEPLPPAAESLPSPLPERALTSAKLAALHARLNLSPKIPLQTLARTLVDASADENPQFNNANLAFVGQTLINYHIAEWLLCKYPRLPQGILFSAMKAYAGPKPLLQIARSWGVDTAAVPGGEVDPGLLQFDALKPGVAITNFGYKRTELAYLEKFKWRRGMASRVVLDDDFGDVVRSDPKVAADLEKAMEEQDQDKTPDEEEAEMVANEQDQDVSYDRYGNPDTRAAAERAHAYFVRAVVGAIYAHCGREAAKAFVKAHIMSRTLDIAKLFEFKYPTRELAALCAREDFEPPVARLLSETGRQSRTPVFVVGIYSGSDKLGEGAASSLDHARFKAAMNALKAWYLYSPGENPRVPSDMLEEGAKPWTPAYIDMGEVISR |
| 50S ribosomal subunit L30 | 6 | 368 | Neurospora Crassa Or74A | MSASSRGAALLRSQQRSICLQCRNQTRVLAPAGVTSAPRRFYSAEASATATATATATTTTTLPPPHPPVTTSTGTHAATSTSSQIYRIKSGVILTRPPLLTRDLTPFEESFYFYQKRLNERLTAPFRKDFYFKKDTAADLDWRIKLKERHGVPAKDIGRYNPRGRMAWNDEVLVGSQTSSRKHMVEKLLADAEMRVSEDGEEIPAEDRVPVEKPMPRRTEADEKGDVKRLDRALDKTLYLVVKKKADKEGEEAKWMFPTGVVPTDEGLHETAARILAESAGVNMNTWIVGRVPVAHHVVRPVFGQKDGALLKKGEKIFFLKGRIMAGQADLTDNLHDLVDFKWLTQEELRSTLAEEYFHSVKGMFAER |
| Uncharacterized protein | 7 | 165 | Neurospora Crassa Or74A | MFRSTFFGLSRAIVQPATPLTVRAAFQSRFYSAAAAASQPTTTATTTTPLQQQQQQQPTTQPTTPIQTQTGAAPTESTKPVAKPYLVGRAWTQRLPVYHLAKRGGNKKLTQIKKVQGDGQALRRDLAQFLGLEVKEVRVKVPTGHLEVDGHRREEIVKFLDGLGF |
| Uncharacterized protein | 8 | 443 | Neurospora Crassa Or74A | MRRIPRIPSTASALCSSSSSVASTSAAPLRTLRAAADSSSICQSCSFSTQTSATRNRVWQNTVQTQRRCASTVTETTPEAPVAAAAAETATESTETVEQQRKRKGGFFETQRQVNLVLPGQPTRADAPEKIRDPNYEPATSGAGLQEIGGMSDWWSKPEHFRDGGKQFEYQGFAPQEKITDPRLLKVILRRALAEGLALKKFGANPKNPADMASIIGNGDHWQRTVSVEMCRGENGELSLKNESDLQKVWILMRNAAEKTYYQREWQEEINRLRSLGEKEQAKQLLEEGKKLGYRLKSEEGSLVKLTVDEAVELRKSWNNDWKEAIIRDPVVKFYAAKRIQKMTGHILSDGKLTSIQTVANFMDALVTPPKPKKLAEQIEQSSILPELPNVKVYPRRVTPVDKERMVGRWKVIQKELQKRELPVLGTGNHGKYVELKWLGSKQ |
| RNase III domain-containing protein | 9 | 267 | Neurospora Crassa Or74A | MAALTPSRSVFASTCKTIAQQCSRRPVAVQQLAAVPVARQVSSSSAVQQEQDASGTSSSQQPRPRWSYTPERMKGPGFSLNLVKDPRRKQWMVNSDPAKLDAFYDAFLGQGGSRMLSEETKWLAVTHKSFDYGRRGYNTRLAFLGRQIIALETTRSILTSPVLNEPIVDKYGRTPYNHAALANIDKLIYTQPLDIMDKTKIARMGIDFGLLTVMRWKPRMPEDLESSGVVVVLNSTLFAIIGAISLEKGAAVAQRIVREKILKRLGA |
| Uncharacterized protein | D | 292 | Neurospora Crassa Or74A | MNSVTTSTIGRLAFGVSRLSAVTNVAGAVRHASTHPTTAIPKPTTAVLKTSPLAEETAVELKSPSRLQLKSEPGNKGNPKGHGDRIWAFHHIEQGQVIYSTKPVISHQHLIRQQPFTGKNLVPRKIRKDYWRPLAMIELAGKDQGAVGRSVYQKLREFKKRHELDWANEAEEGRKLMHKSKRERGQELNDQKPNSVADMAAVLAGAGKGNLMWQVSRLGSSSELVGEIKKASGAVEKGAVVDVKRQLRRATVYWTNEQDKFHAREWSDNVSHEVGIPGEAEKKRMPIRMSSE |
| 50S ribosomal protein L5 | E | 352 | Neurospora Crassa Or74A | MASLRGVSRSARALQPFSAQFAVRRCASTQTGAGAAAATPKSNIPDLAELETRSALDAPIPSEEDKKEFRPWKRAADRKARLPSSRYQYHPPKYNRGPLHPIQSPPSSDPIARDFVPGPFNMPRLKETFRTVMASDLMTLAYIHTPPGTPKKEPTERLRAWEGDSPYFANRARRAPRGAPELPIRERDISFRNIPEIKEITVSTFVPLGLKNPDLLIVARAVLLAMTGTMPEMTRSKNNVVQWQLQANKPAGCKTTIYGNAAWEFMDRLIHLVLPRIKDWKGVPASTGDGSGNVQFGLNPEDVQLFPEVECNYDMYPAKMIPGCHIAIKTTATSDRQAKLLLQSLGVPFYSN |
| Uncharacterized protein | F | 347 | Neurospora Crassa Or74A | MSLRLSRPAVRGLGSAIKSSRISSRSAALLVPSTSTSAFSTASPQRAAAAGHLRLPDDYVPPTQPPSARPVDTRKSQLLRTYTSMLRSTPLMLIFQHNNLTAIEWAAIRRELSLALSNVPVPEGAPDITSKIHLQVVRTRIFDVALKTVEFFDPSTVEPTTATTATGTKVPATYNHDLSKHAWKAVKEATKNTEAVEKTVYGQLAPLLVGPVAILTLPSVSPAHLGAALSVLAPSPPAFPAPSRKKNPGYYDLTCQSGLQKLLLVGGRIEGKAFDYDGIKWVGGIENGIEGLRAQLVHMLQSAGMGLTSVLEGAGKSLWLTMESRRSVLEEEQNPKKEGEGEEEKKE |
| 60S ribosomal protein L19 | G | 158 | Neurospora Crassa Or74A | MSKAAKGGAGGVEQVVKLIVGAGQASPSPPVGPALGSKGIKSMDFCKEFNARTAHINTGTPMPVRVTVRPDRSFHFDVRTPHTSWLLLNAAEAPIGKGGKRKGASNPGKEVVGTVSLKHVYEIAKIKQSELRLSGLPLEGLCRAVIYQARSIGINVIP |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2020-04-30 Deposition Author(s): Amunts, A. , Itoh, Y. , Naschberger, A.