6XP5
Head-middle module of mediator
PDB DOI: 10.2210/pdb6xp5/pdb
Classification: TRANSCRIPTION Organism(s): Chaetomium Thermophilum , Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719)
Deposited: 2020-07-08 Deposition Author(s): Chen, D.C. , Kornberg, R.D. , Zhang, H.Q.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 4.2 Å
Head-middle module of mediator
Chen, D.C. , Kornberg, R.D. , Zhang, H.Q.
Primary Citation of Related Structures: 6XP5
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Mediator of RNA polymerase II transcription subunit 21 | U | 135 | Chaetomium Thermophilum , Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) | DRLTQLQEAMDELLEMFLSAFFWVERHHDLKTFGPNDKIPDLKADQPKEVDTKSPEEYKAGQLQLARDIIVKEQQIEYLISTLPGLDNSEREQIQLLRELEDDLVTAEAQRQEALKERDEVLGKLDALLRGLERP |
| Mediator of RNA polymerase II transcription subunit 11 | K | 238 | Chaetomium Thermophilum , Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) | MAQPSQSSVPESDAGSFPVDIHKPFTPAERIQQLGEIDNDIASLLQHLSAALKALATPPGKRIFQEQDSESNSPSASDTSNPNDTPPSSCGIDPVTAFKTAQNDFFRTIDRIDKHLTRQIYALEEAGIITLKSGTGSGAGTVGAGATEEQAQQLPQPQMIPGQPQAAGITADASVAPVPKARLEPDGMGRYGKLDVGRLNMASSIVEREMEGELWRKAREHLGRMTSQASGREDRMEE |
| Mediator of RNA polymerase II transcription subunit 18 | R | 340 | Chaetomium Thermophilum , Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) | MPYEIFLAGVVSDNDEAKARAVLGGFTEMREHHRFTRVQHYEPQDIKIRGFPTIKELLKERGPTTALYQELHNILVRQPYTLQIRTNITDAILGPAQAGAEAAPHGTVSGGKPHILRWSDIPDPPNQRIPPFITQRKIIEIPDQRAPRILAASKFRNKSDLVEESYHWWFNDVEYSMVRTYLISLDPSPQTTDQVPSLAGLEPIGDFWLLYVRMRVEATPDRMQQAHNQLQQIRDQLLGVFEFKVWDRRAHDTRIMEQPTQGNGNVIGDAHNSNKKSNGVSPTTASSSEEVSPVDSQLTIPLPDDDDGDNVEDTPDTEMDEDDDESEYDSDSERDWPKDD |
| Med22 | V | 169 | Chaetomium Thermophilum , Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) | MDRDQGASDNLLERKNILIASIMTSYRDLITHATSPITSATASPGHAGYSSMALSTAIHAAVKYTEDLLSLTRTLREALWVVGPLTGPGEKDAQAEEGMAKDAEVVWDVLNEMRDRERERMMAALMEGDTRVRGAVRFERGDVEVVVAGQGQQIEMGRGVNGEVKSEGA |
| Mediator of RNA polymerase II transcription subunit 1 | A | 736 | Chaetomium Thermophilum , Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) | MSTPIPTPGRNPLQGRTPSQAHGAAGTPPVSTPFSAAQAVFSPNGPRSSPQQFKRSPATVGSTTATGGRPPSAINFDSPSASAALGALQPMTPGMDMTIRSLANLGRASEDERAKRLEEVIHILSKSKGLVSEAGLERLARSLELEFMWESSMGSDNKRTLIVAGSALELLVEFSQDVVQSVTLNFPDSPEIVTKHAQKAGEILFNDLRLAPGQSPLTKSLARFAANFERLAVLDKLSILPGLNLYEAVADVYESLARLHAWELQKLREDPSLAGKDDEYLENLVLCTKSGKPAMNDRGRVGLALDYWKEKHLLRTPEAEVASWIADNERTWSILIGCAPLRDLSINPVRISDKWIGPNVVKTSLPDGLHTGEPIIDWLDPEPTFIPATDQQQQQQQQQQQQQQQQQQQQQADAPLLPPRLPEVAFHAVFDPPVHIPINLWQHLQEMGCVLPDETATQPFQQHHFRSFDSLVIPPPQGKETDATETRVFSCRKKTPFVPRRSGVRNGEGATQKMEYRIHQNTLFVPKPVMCRTLTEMSFSHPQQLVSILPYLRQYAFLAQLLENSFKPGPALQLPTDPNADTTTSKPTPNAKASHKKLDDFEAFLAKHSSHSGPISNMTPSQHQPSSDLSIDVTLRLVLPSPKLQIVFPLHATSKEEVKGKIAHVTFAVRENGRLEVEMQNMIEEEGDQMEGVKTEGDEDGEEKKRRRPQPGDLARALEVLEDVGKWAEFVRTRWV |
| Unknown peptide | B | 21 | Chaetomium Thermophilum , Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) | XXXXXXXXXXXXXXXXXXXXX |
| HEAT | C | 200 | Chaetomium Thermophilum , Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| Mediator of RNA polymerase II transcription subunit 4 | D | 341 | Chaetomium Thermophilum , Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) | MDKELDGRFERLEKALATMIDSLSKNNPSTKLAQDLVAAEAELLEGLKLLEAHQNNHARIQQLRQSTEQADAQIKDIISSLWKMRQELTSVQTSPIPKGAKFQFTTGELLDFARRISRNTLPPPGVTNGVNMTPAAARHSQQPSSVEPEDSFRVTSQSQTQTPNTSFNVSFNGTLVDTPGPFNNNSTPIPNAGPANSQNPHTELPEHLKLATNPLHGASFFPWPSVEQVRSGALGAYQLLVDKGIDPRGYDPEFEEQRRKDAEREAEERAKQEREEAERRAREEAERIARQRELERQRARESMAAAAEEGRRDSVVGGPAAGKPKQFTFLGGDDDDDDDDD |
| Mediator of RNA polymerase II transcription subunit 6 | F | 337 | Chaetomium Thermophilum , Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) | MADPSSSTSAMPLDEIQWHTNPAVVGGSIHDNSVLFYFRESPFYDKTSNNEVLYQQGLHNQTMMQFLETRERFERRLREMSGLEFVVAQEPAETAPGTGTGVWVINKQTRRKRQGEEDEISVHGTYFLVGENVYMAAPTLADIISMRLASASSSISRLLPIAASVQSWSPGTGRVYKTPSMTSQTNQANQPSSQTQSQPTSQPATTTTTTALPPPDPRWLEETLMIHEFFGDHHLDKNPITGKPGDFHLSSTGRKIQTLPTAAAGNKKPGSGLPPLPAINTKVQQNPMGSGKQVTGKETKSPKTPSSSTGPGTGGMSTGMGKPKKRKSSKAAVTPTS |
| Mediator of RNA polymerase II transcription subunit 7 | G | 246 | Chaetomium Thermophilum , Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) | MDSSEDDGNKVAHLWPDPPAFWKDFTPENIERYNALKQTYAQQHGLSSDALVRIPDVPADLINLQPPPEPVDGKWKLYGQQEALANSLQSLEDAGIQRLAPASETTSDSKHFDRGFELKKLAKSLLVNYLELMGIMSINPAHASEKVQDIKTIVLNFHHILNEYRPHQAREQLIQLMQDHLDAKRNETAAVRAVVDKAKRLIEGLASIEIPKVEDDNGRKAVEVERAALAERREIAAWQEADALFT |
| Mediator of RNA polymerase II transcription subunit 9 | I | 179 | Chaetomium Thermophilum , Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) | MTAPLPEGLTPDAVDTLTELSAIIKKLRAAQQQQAANPSSQAAAGGPGTTGAPGSQPSSSGPNATAAGGAIGTTSLPSSATTGPTPSNALHSVKELPATTDPIKHKLQRARAAVRLLGDMSRTMAQQEAELARLEERRRKQAAMLAKAQEEGARLSKGFGEVGETPVVLVETGDKMAME |
| Mediator of RNA polymerase II transcription subunit 14 | N | 1171 | Chaetomium Thermophilum , Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) | MEARAHGALPNNYDRERFINGVGGDDKALKRKLEEPLSDITKELDTVIAQSDVAVADPKGQLCPDADVPDEMEHITDGILPLNLLLIRLAEFSHSKLEELVTMLASKPVPQHAVNGNGSHSTLVEDASPESQEKKRLLLNTIQDLHSRWVKALVITEWARNAEKVGKLIDIRTHLFKKLELYPQVLNDFINLKRDMAWAKVPSPDLKTALHILTHGEVTWMPDFNFLDPPPLTTEETLRWINDMNLALHARLQLEEHDKLPPPFKNYTIDSGRVTFRVRGEFEVDLSISEEDFSEQFWFINFRFDFSPAPAELTPAVRYWMTEKVNNILKTEGLGGCYKYLHEFTLTQKIAELHRQAIALNKGRWANSLRVEKLNRNLGIHYWANRLHSQNLKSWIIIGVHSGEDPQGLEEPKPSYLMVQWFREGVEQFIDIPFSQEKLSIEEILEFVTAKHVGYLLFSLFRKFDGKPRFTQGKKARLELNVWTQKPEDYYLSMQLLDDEDLKIQVNPWMGDFITTPSTGPWNRTLNSLGNPAEEGSKELENFRYIYIISVLKAQGKSHGWSVVRSPISQDELRSIVHSESASSRETFQAAWTRFVDWDPQWYAMRSMSLAGDQWWLVEVTSQRQSISGNRLVFFTKMAPCFSEERLTDGFFNGLRDHSRRLIAEITNLRELYPGITPSQLRKLIDPTRQPPVLPVKASKILGDFGGADAQSIAWLKDPVWLIYRGSACDAAATRVSDSPQQKRTQPVLDVFEAYLDVTDRRRFQTLNPRLDRDILYNPYTGRFMFRLRAKMGVPVVPLLGIRVRQLQRLLDFLEGLRRVGDQAVPERVTLREIVFSYGATRKRDSTNQPKVRPWRVRLDLTKEEGVGVVLEKGNPHLRVINRLEDLVNSQKFYSLATYLTLSLPLFRAFEQLENAWQTAQENGRGSCFILHLSLDKHTIRFVLPGHQRQISLLIQPHEKEGKLVWEVGRPRHDPELLNENCEFNRVLKERVWTISGSGFKGLVTGAAAEPDEGIERLLVLISDAVLHLSTSQPATAPPQPPQAQPSQQVQQVQQQQVVSQLQPQAQQPRSAMPHASVGQQQPHGAPAPMARFPPQQQQIFQQQRPPQPQPNMHGGQISQPNMHGGPKPQLQGQHGQPGQMVAAPQQQGQRPGTGTAAGMGRSNAPLVVLD |
| Mediator of RNA polymerase II transcription subunit 17 | Q | 634 | Chaetomium Thermophilum , Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) | MTDRPFILQVPPTQQRGPQNIAEFVARINPDAFRVLNEAELRRKVEEEKNGVGQDEDVDMESSPSDNEGEPADAKDIITAKHEMLRVIDQTRQTTLYALDFVSLLLSKENPGQAVTTFSPGLRELVGIGTLGATMLDAPTPLTQSRIPDNKLVTIGKRLMDLNKAADTALAASKRLQKEIAAETKYWSEVLAVRNDGWQTSRMPREPQTMGVKFGFNNAAPEFKAVSIAPMRRADNGSVLLDRSSIGHKSQRIQVRILEDGRIVGRSSLPSPVSADAPLQDRVKEMRDTIFAQELWHEINREARTLLNQGVHLEPSSITYTMDASTTVSIRLATLGEEEEGLDEQQEGPQDVMAESLNIALSLLLSHAHRMNELRRSEPGINKGPPRTYPILLPLISYHKYNQSIQTCLQTLSAHISVLRSASVDSSMTVKEPLLSSPPGAPAATSLYTILTRPPAVQFDITITPDSRIRILLKPTQLTGAAFSICCLPALHPGAQNPLATTCPPSTDDYDSLTQVVSYLQAAIPRALAAHYEAVLVVEATVNGGMLGDLPPSPSRWMPLIDGKGIVDPETMRFGIRFSFGRNPAKGGQLELGAQTDYVDGSRKRVRRNWIWPGAQSSLDSVAKHVLARGPPEE |
| Mediator of RNA polymerase II transcription subunit 31 | Z | 124 | Chaetomium Thermophilum , Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) | MSVDSSGMEPPPLPSDGPEEPKHGGHTRFELELEFVQALSNPEYVNWLASRKYLMNPAFVAYLDYLQYWSRPPYLKYLTYPTATLRMLQLLQSERFRQEILVPDVAWQLRLEGMKAAVLWHKEG |
| Mediator of RNA polymerase II transcription subunit 8 | H | 290 | Chaetomium Thermophilum , Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) | MASLNLAPEELKQLELLRNRFAQLQSSLTSLAGNLIRTEPLPTYESLQASASILQQNLRSIQELMTENSDIFKRIAIHPSTNFPGRTQEHMLLQLLRKKLEPEVESWVEEARETARAAGIDVSKLSGPGGGAPTRGMNGYGDDDEYGLDDEDEGVPSDPFNEQWADMLETFQHSLHHYVTVQLKKQYTVEEQEMGIENVRTGLKRELGDEDEDEDEDEEEEEEGVAGVAGGAASQGAGAGTAGAAAKKPVIQPEYLFWLAARGDTRVSRNIEFEAMRKVAQTAKRPAPPR |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2020-07-08 Deposition Author(s): Chen, D.C. , Kornberg, R.D. , Zhang, H.Q.