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FASTA Sequence PDB Format mmCIF Format
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6XP5

Head-middle module of mediator

PDB DOI: 10.2210/pdb6xp5/pdb

Classification: TRANSCRIPTION
Organism(s): Acinetobacter Sp. Anc 5600 , Rubrivivax Gelatinosus Il144

Deposited: 2020-07-08
Deposition Author(s): Chen, D.C. , Kornberg, R.D. , Zhang, H.Q.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.2 Å

6xp5
Literature

Head-middle module of mediator

Chen, D.C. , Kornberg, R.D. , Zhang, H.Q.

Primary Citation of Related Structures: 6XP5


Proteins
Molecule Chains Sequence Length Organism Sequence
Mediator of RNA polymerase II transcription subunit 21 U 135 Acinetobacter Sp. Anc 5600 , Rubrivivax Gelatinosus Il144 DRLTQLQEAMDELLEMFLSAFFWVERHHDLKTFGPNDKIPDLKADQPKEVDTKSPEEYKAGQLQLARDIIVKEQQIEYLISTLPGLDNSEREQIQLLRELEDDLVTAEAQRQEALKERDEVLGKLDALLRGLERP
Mediator of RNA polymerase II transcription subunit 11 K 238 Acinetobacter Sp. Anc 5600 , Rubrivivax Gelatinosus Il144 MAQPSQSSVPESDAGSFPVDIHKPFTPAERIQQLGEIDNDIASLLQHLSAALKALATPPGKRIFQEQDSESNSPSASDTSNPNDTPPSSCGIDPVTAFKTAQNDFFRTIDRIDKHLTRQIYALEEAGIITLKSGTGSGAGTVGAGATEEQAQQLPQPQMIPGQPQAAGITADASVAPVPKARLEPDGMGRYGKLDVGRLNMASSIVEREMEGELWRKAREHLGRMTSQASGREDRMEE
Mediator of RNA polymerase II transcription subunit 18 R 340 Acinetobacter Sp. Anc 5600 , Rubrivivax Gelatinosus Il144 MPYEIFLAGVVSDNDEAKARAVLGGFTEMREHHRFTRVQHYEPQDIKIRGFPTIKELLKERGPTTALYQELHNILVRQPYTLQIRTNITDAILGPAQAGAEAAPHGTVSGGKPHILRWSDIPDPPNQRIPPFITQRKIIEIPDQRAPRILAASKFRNKSDLVEESYHWWFNDVEYSMVRTYLISLDPSPQTTDQVPSLAGLEPIGDFWLLYVRMRVEATPDRMQQAHNQLQQIRDQLLGVFEFKVWDRRAHDTRIMEQPTQGNGNVIGDAHNSNKKSNGVSPTTASSSEEVSPVDSQLTIPLPDDDDGDNVEDTPDTEMDEDDDESEYDSDSERDWPKDD
Med22 V 169 Acinetobacter Sp. Anc 5600 , Rubrivivax Gelatinosus Il144 MDRDQGASDNLLERKNILIASIMTSYRDLITHATSPITSATASPGHAGYSSMALSTAIHAAVKYTEDLLSLTRTLREALWVVGPLTGPGEKDAQAEEGMAKDAEVVWDVLNEMRDRERERMMAALMEGDTRVRGAVRFERGDVEVVVAGQGQQIEMGRGVNGEVKSEGA
Mediator of RNA polymerase II transcription subunit 1 A 736 Acinetobacter Sp. Anc 5600 , Rubrivivax Gelatinosus Il144 MSTPIPTPGRNPLQGRTPSQAHGAAGTPPVSTPFSAAQAVFSPNGPRSSPQQFKRSPATVGSTTATGGRPPSAINFDSPSASAALGALQPMTPGMDMTIRSLANLGRASEDERAKRLEEVIHILSKSKGLVSEAGLERLARSLELEFMWESSMGSDNKRTLIVAGSALELLVEFSQDVVQSVTLNFPDSPEIVTKHAQKAGEILFNDLRLAPGQSPLTKSLARFAANFERLAVLDKLSILPGLNLYEAVADVYESLARLHAWELQKLREDPSLAGKDDEYLENLVLCTKSGKPAMNDRGRVGLALDYWKEKHLLRTPEAEVASWIADNERTWSILIGCAPLRDLSINPVRISDKWIGPNVVKTSLPDGLHTGEPIIDWLDPEPTFIPATDQQQQQQQQQQQQQQQQQQQQQADAPLLPPRLPEVAFHAVFDPPVHIPINLWQHLQEMGCVLPDETATQPFQQHHFRSFDSLVIPPPQGKETDATETRVFSCRKKTPFVPRRSGVRNGEGATQKMEYRIHQNTLFVPKPVMCRTLTEMSFSHPQQLVSILPYLRQYAFLAQLLENSFKPGPALQLPTDPNADTTTSKPTPNAKASHKKLDDFEAFLAKHSSHSGPISNMTPSQHQPSSDLSIDVTLRLVLPSPKLQIVFPLHATSKEEVKGKIAHVTFAVRENGRLEVEMQNMIEEEGDQMEGVKTEGDEDGEEKKRRRPQPGDLARALEVLEDVGKWAEFVRTRWV
Unknown peptide B 21 Acinetobacter Sp. Anc 5600 , Rubrivivax Gelatinosus Il144 XXXXXXXXXXXXXXXXXXXXX
HEAT C 200 Acinetobacter Sp. Anc 5600 , Rubrivivax Gelatinosus Il144 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Mediator of RNA polymerase II transcription subunit 4 D 341 Acinetobacter Sp. Anc 5600 , Rubrivivax Gelatinosus Il144 MDKELDGRFERLEKALATMIDSLSKNNPSTKLAQDLVAAEAELLEGLKLLEAHQNNHARIQQLRQSTEQADAQIKDIISSLWKMRQELTSVQTSPIPKGAKFQFTTGELLDFARRISRNTLPPPGVTNGVNMTPAAARHSQQPSSVEPEDSFRVTSQSQTQTPNTSFNVSFNGTLVDTPGPFNNNSTPIPNAGPANSQNPHTELPEHLKLATNPLHGASFFPWPSVEQVRSGALGAYQLLVDKGIDPRGYDPEFEEQRRKDAEREAEERAKQEREEAERRAREEAERIARQRELERQRARESMAAAAEEGRRDSVVGGPAAGKPKQFTFLGGDDDDDDDDD
Mediator of RNA polymerase II transcription subunit 6 F 337 Acinetobacter Sp. Anc 5600 , Rubrivivax Gelatinosus Il144 MADPSSSTSAMPLDEIQWHTNPAVVGGSIHDNSVLFYFRESPFYDKTSNNEVLYQQGLHNQTMMQFLETRERFERRLREMSGLEFVVAQEPAETAPGTGTGVWVINKQTRRKRQGEEDEISVHGTYFLVGENVYMAAPTLADIISMRLASASSSISRLLPIAASVQSWSPGTGRVYKTPSMTSQTNQANQPSSQTQSQPTSQPATTTTTTALPPPDPRWLEETLMIHEFFGDHHLDKNPITGKPGDFHLSSTGRKIQTLPTAAAGNKKPGSGLPPLPAINTKVQQNPMGSGKQVTGKETKSPKTPSSSTGPGTGGMSTGMGKPKKRKSSKAAVTPTS
Mediator of RNA polymerase II transcription subunit 7 G 246 Acinetobacter Sp. Anc 5600 , Rubrivivax Gelatinosus Il144 MDSSEDDGNKVAHLWPDPPAFWKDFTPENIERYNALKQTYAQQHGLSSDALVRIPDVPADLINLQPPPEPVDGKWKLYGQQEALANSLQSLEDAGIQRLAPASETTSDSKHFDRGFELKKLAKSLLVNYLELMGIMSINPAHASEKVQDIKTIVLNFHHILNEYRPHQAREQLIQLMQDHLDAKRNETAAVRAVVDKAKRLIEGLASIEIPKVEDDNGRKAVEVERAALAERREIAAWQEADALFT
Mediator of RNA polymerase II transcription subunit 9 I 179 Acinetobacter Sp. Anc 5600 , Rubrivivax Gelatinosus Il144 MTAPLPEGLTPDAVDTLTELSAIIKKLRAAQQQQAANPSSQAAAGGPGTTGAPGSQPSSSGPNATAAGGAIGTTSLPSSATTGPTPSNALHSVKELPATTDPIKHKLQRARAAVRLLGDMSRTMAQQEAELARLEERRRKQAAMLAKAQEEGARLSKGFGEVGETPVVLVETGDKMAME
Mediator of RNA polymerase II transcription subunit 14 N 1171 Acinetobacter Sp. Anc 5600 , Rubrivivax Gelatinosus Il144 MEARAHGALPNNYDRERFINGVGGDDKALKRKLEEPLSDITKELDTVIAQSDVAVADPKGQLCPDADVPDEMEHITDGILPLNLLLIRLAEFSHSKLEELVTMLASKPVPQHAVNGNGSHSTLVEDASPESQEKKRLLLNTIQDLHSRWVKALVITEWARNAEKVGKLIDIRTHLFKKLELYPQVLNDFINLKRDMAWAKVPSPDLKTALHILTHGEVTWMPDFNFLDPPPLTTEETLRWINDMNLALHARLQLEEHDKLPPPFKNYTIDSGRVTFRVRGEFEVDLSISEEDFSEQFWFINFRFDFSPAPAELTPAVRYWMTEKVNNILKTEGLGGCYKYLHEFTLTQKIAELHRQAIALNKGRWANSLRVEKLNRNLGIHYWANRLHSQNLKSWIIIGVHSGEDPQGLEEPKPSYLMVQWFREGVEQFIDIPFSQEKLSIEEILEFVTAKHVGYLLFSLFRKFDGKPRFTQGKKARLELNVWTQKPEDYYLSMQLLDDEDLKIQVNPWMGDFITTPSTGPWNRTLNSLGNPAEEGSKELENFRYIYIISVLKAQGKSHGWSVVRSPISQDELRSIVHSESASSRETFQAAWTRFVDWDPQWYAMRSMSLAGDQWWLVEVTSQRQSISGNRLVFFTKMAPCFSEERLTDGFFNGLRDHSRRLIAEITNLRELYPGITPSQLRKLIDPTRQPPVLPVKASKILGDFGGADAQSIAWLKDPVWLIYRGSACDAAATRVSDSPQQKRTQPVLDVFEAYLDVTDRRRFQTLNPRLDRDILYNPYTGRFMFRLRAKMGVPVVPLLGIRVRQLQRLLDFLEGLRRVGDQAVPERVTLREIVFSYGATRKRDSTNQPKVRPWRVRLDLTKEEGVGVVLEKGNPHLRVINRLEDLVNSQKFYSLATYLTLSLPLFRAFEQLENAWQTAQENGRGSCFILHLSLDKHTIRFVLPGHQRQISLLIQPHEKEGKLVWEVGRPRHDPELLNENCEFNRVLKERVWTISGSGFKGLVTGAAAEPDEGIERLLVLISDAVLHLSTSQPATAPPQPPQAQPSQQVQQVQQQQVVSQLQPQAQQPRSAMPHASVGQQQPHGAPAPMARFPPQQQQIFQQQRPPQPQPNMHGGQISQPNMHGGPKPQLQGQHGQPGQMVAAPQQQGQRPGTGTAAGMGRSNAPLVVLD
Mediator of RNA polymerase II transcription subunit 17 Q 634 Acinetobacter Sp. Anc 5600 , Rubrivivax Gelatinosus Il144 MTDRPFILQVPPTQQRGPQNIAEFVARINPDAFRVLNEAELRRKVEEEKNGVGQDEDVDMESSPSDNEGEPADAKDIITAKHEMLRVIDQTRQTTLYALDFVSLLLSKENPGQAVTTFSPGLRELVGIGTLGATMLDAPTPLTQSRIPDNKLVTIGKRLMDLNKAADTALAASKRLQKEIAAETKYWSEVLAVRNDGWQTSRMPREPQTMGVKFGFNNAAPEFKAVSIAPMRRADNGSVLLDRSSIGHKSQRIQVRILEDGRIVGRSSLPSPVSADAPLQDRVKEMRDTIFAQELWHEINREARTLLNQGVHLEPSSITYTMDASTTVSIRLATLGEEEEGLDEQQEGPQDVMAESLNIALSLLLSHAHRMNELRRSEPGINKGPPRTYPILLPLISYHKYNQSIQTCLQTLSAHISVLRSASVDSSMTVKEPLLSSPPGAPAATSLYTILTRPPAVQFDITITPDSRIRILLKPTQLTGAAFSICCLPALHPGAQNPLATTCPPSTDDYDSLTQVVSYLQAAIPRALAAHYEAVLVVEATVNGGMLGDLPPSPSRWMPLIDGKGIVDPETMRFGIRFSFGRNPAKGGQLELGAQTDYVDGSRKRVRRNWIWPGAQSSLDSVAKHVLARGPPEE
Mediator of RNA polymerase II transcription subunit 31 Z 124 Acinetobacter Sp. Anc 5600 , Rubrivivax Gelatinosus Il144 MSVDSSGMEPPPLPSDGPEEPKHGGHTRFELELEFVQALSNPEYVNWLASRKYLMNPAFVAYLDYLQYWSRPPYLKYLTYPTATLRMLQLLQSERFRQEILVPDVAWQLRLEGMKAAVLWHKEG
Mediator of RNA polymerase II transcription subunit 8 H 290 Acinetobacter Sp. Anc 5600 , Rubrivivax Gelatinosus Il144 MASLNLAPEELKQLELLRNRFAQLQSSLTSLAGNLIRTEPLPTYESLQASASILQQNLRSIQELMTENSDIFKRIAIHPSTNFPGRTQEHMLLQLLRKKLEPEVESWVEEARETARAAGIDVSKLSGPGGGAPTRGMNGYGDDDEYGLDDEDEGVPSDPFNEQWADMLETFQHSLHHYVTVQLKKQYTVEEQEMGIENVRTGLKRELGDEDEDEDEDEEEEEEGVAGVAGGAASQGAGAGTAGAAAKKPVIQPEYLFWLAARGDTRVSRNIEFEAMRKVAQTAKRPAPPR
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2020-07-08
Deposition Author(s): Chen, D.C. , Kornberg, R.D. , Zhang, H.Q.