6W1O
Rt xfel structure of the dark-stable state of photosystem ii (0f, s1-rich) at 2.08 angstrom resolution
PDB DOI: 10.2210/pdb6w1o/pdb
Classification: PHOTOSYNTHESIS Organism(s): Thermosynechococcus Elongatus (Strain Bp-1)
Deposited: 2020-03-04 Deposition Author(s): Adams, P.D. , Alonso-Mori, R. , Batyuk, A. , Bergmann, U. , Bhowmick, A. , Bogacz, I. , Bolotovski, R. , Brewster, A.S. , Carbajo, S. , Chatterjee, R. , Cheah, M.H. , Chernev, P. , De Lichtenberg, C. , Dobbek, H. , Fransson, T. , Fuller, F.D. , Gul, S. , Holton, J.M. , Hussein, R. , Ibrahim, M. , Kern, J. , Kim, I.-S. , Lassalle, L. , Mendez, D. , Messinger, J. , Moriarty, N.W. , Northen, T.R. , Orville, A.M. , Owada, S. , Pham, C. , Saichek, N. , Sauter, N.K. , Simon, P.S. , Sutherlin, K.D. , Tono, K. , Yachandra, V.K. , Yano, J. , Young, I.D. , Zouni, A.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.08 Å
Rt xfel structure of the dark-stable state of photosystem ii (0f, s1-rich) at 2.08 angstrom resolution
Adams, P.D. , Alonso-Mori, R. , Batyuk, A. , Bergmann, U. , Bhowmick, A. , Bogacz, I. , Bolotovski, R. , Brewster, A.S. , Carbajo, S. , Chatterjee, R. , Cheah, M.H. , Chernev, P. , De Lichtenberg, C. , Dobbek, H. , Fransson, T. , Fuller, F.D. , Gul, S. , Holton, J.M. , Hussein, R. , Ibrahim, M. , Kern, J. , Kim, I.-S. , Lassalle, L. , Mendez, D. , Messinger, J. , Moriarty, N.W. , Northen, T.R. , Orville, A.M. , Owada, S. , Pham, C. , Saichek, N. , Sauter, N.K. , Simon, P.S. , Sutherlin, K.D. , Tono, K. , Yachandra, V.K. , Yano, J. , Young, I.D. , Zouni, A.
Primary Citation of Related Structures: 6W1O
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Photosystem II protein D1 1 | A | 334 | Thermosynechococcus Elongatus (Strain Bp-1) | ANLWERFCNWVTSTDNRLYVGWFGVIMIPTLLAATICFVIAFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLIIFHFLLGASCYMGRQWELSYRLGMRPWICVAYSAPLASAFAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHQLGVAGVFGGALFCAMHGSLVTSSLIRETTETESANYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGVWFTALGISTMAFNLNGFNFNHSVIDAKGNVINTWADIINRANLGMEVMHERNAHNFPLDLA |
| Photosystem II reaction center protein K | K | 46 | Thermosynechococcus Elongatus (Strain Bp-1) | MIDALVLVAKLPEAYAIFDPLVDVLPVIPVLFLALAFVWQAAVGFR |
| Photosystem II reaction center protein L | L | 37 | Thermosynechococcus Elongatus (Strain Bp-1) | MEPNPNRQPVELNRTSLYLGLLLILVLALLFSSYFFN |
| Photosystem II reaction center protein M | M | 36 | Thermosynechococcus Elongatus (Strain Bp-1) | MEVNQLGLIATALFVLVPSVFLIILYVQTESQQKSS |
| Photosystem II manganese-stabilizing polypeptide | O | 272 | Thermosynechococcus Elongatus (Strain Bp-1) | MKYRILMATLLAVCLGIFSLSAPAFAAKQTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALPQAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIEPA |
| Photosystem II protein Y | R | 40 | Thermosynechococcus Elongatus (Strain Bp-1) | DWRVLVVLLPVLLAAGWAVRNILPYAVKQVQKLLQKAKAA |
| Photosystem II reaction center protein T | T | 30 | Thermosynechococcus Elongatus (Strain Bp-1) | METITYVFIFACIIALFFFAIFFREPPRIT |
| Photosystem II 12 kDa extrinsic protein | U | 134 | Thermosynechococcus Elongatus (Strain Bp-1) | MQRLGRWLALAYFVGVSLLGWINWSAPTLAATASTEEELVNVVDEKLGTAYGEKIDLNNTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEHFTVTEVETALVEGGDRYNNGLYK |
| Cytochrome c-550 | V | 163 | Thermosynechococcus Elongatus (Strain Bp-1) | MLKKCVWLAVALCLCLWQFTMGTALAAELTPEVLTVPLNSEGKTITLTEKQYLEGKRLFQYACASCHVGGITKTNPSLDLRTETLALATPPRDNIEGLVDYMKNPTTYDGEQEIAEVHPSLRSADIFPKMRNLTEKDLVAIAGHILVEPKILGDKWGGGKVYY |
| Photosystem II reaction center X protein | X | 41 | Thermosynechococcus Elongatus (Strain Bp-1) | MTITPSLKGFFIGLLSGAVVLGLTFAVLIAISQIDKVQRSL |
| Photosystem II reaction center protein Ycf12 | Y | 46 | Thermosynechococcus Elongatus (Strain Bp-1) | MGIFNGIIEFLSNINFEVIAQLTMIAMIGIAGPMIIFLLAVRRGNL |
| Photosystem II CP47 reaction center protein | B | 506 | Thermosynechococcus Elongatus (Strain Bp-1) | MGLPWYRVHTVLINDPGRLIAAHLMHTALVAGWAGSMALYELATFDPSDPVLNPMWRQGMFVLPFMARLGVTGSWSGWSITGETGIDPGFWSFEGVALAHIVLSGLLFLAACWHWVYWDLELFRDPRTGEPALDLPKMFGIHLFLAGLLCFGFGAFHLTGLFGPGMWVSDPYGLTGSVQPVAPEWGPDGFNPYNPGGVVAHHIAAGIVGIIAGLFHILVRPPQRLYKALRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDSSYFQQEINRRVQASLASGATLEEAWSAIPEKLAFYDYIGNNPAKGGLFRTGPMNKGDGIAQAWKGHAVFRNKEGEELFVRRMPAFFESFPVILTDKNGVVKADIPFRRAESKYSFEQQGVTVSFYGGELNGQTFTDPPTVKSYARKAIFGEIFEFDTETLNSDGIFRTSPRGWFTFAHAVFALLFFFGHIWHGARTLFRDVFSGIDPELSPEQVEWGFYQKVGDVTTRR |
| Photosystem II reaction center protein Z | Z | 62 | Thermosynechococcus Elongatus (Strain Bp-1) | MTILFQLALAALVILSFVMVIGVPVAYASPQDWDRSKQLIFLGSGLWIALVLVVGVLNFFVV |
| Photosystem II CP43 reaction center protein | C | 461 | Thermosynechococcus Elongatus (Strain Bp-1) | MVTLSSNSIFATNRDQESSGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMTLFELAHFIPEKPMYEQGLILIPHIATLGWGVGPGGEVVDTFPFFVVGVVHLISSAVLGFGGVYHAIRGPETLEEYSSFFGYDWKDKNKMTTILGFHLIVLGIGALLLVAKAMFFGGLYDTWAPGGGDVRVITNPTLDPRVIFGYLLKSPFGGEGWIVSVNNLEDVVGGHIWIGLICIAGGIWHILTTPFGWARRAFIWSGEAYLSYSLGALSMMGFIATCFVWFNNTVYPSEFYGPTGPEASQAQAMTFLIRDQKLGANVGSAQGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLNKIKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINSVNFVSPRSWLATSHFVLAFFFLVGHLWHAGRARAAAAGFEKGIDRESEPVLSMPSLD |
| Photosystem II D2 protein | D | 352 | Thermosynechococcus Elongatus (Strain Bp-1) | MTIAIGRAPAERGWFDILDDWLKRDRFVFVGWSGILLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLLLLWGPEAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQFEIARLVGVRPYNAIAFSAPIAVFVSVFLIYPLGQSSWFFAPSFGVAAIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENTLFQDGEGASTFRAFNPTQAEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAWMAPQDQPHENFVFPEEVLPRGNAL |
| Cytochrome b559 subunit alpha | E | 84 | Thermosynechococcus Elongatus (Strain Bp-1) | MAGTTGERPFSDIITSVRYWVIHSITIPALFIAGWLFVSTGLAYDVFGTPRPDSYYAQEQRSIPLVTDRFEAKQQVETFLEQLK |
| Cytochrome b559 subunit beta | F | 45 | Thermosynechococcus Elongatus (Strain Bp-1) | MTSNTPNQEPVSYPIFTVRWVAVHTLAVPTIFFLGAIAAMQFIQR |
| Photosystem II reaction center protein H | H | 66 | Thermosynechococcus Elongatus (Strain Bp-1) | MARRTWLGDILRPLNSEYGKVAPGWGTTPLMAVFMGLFLVFLLIILEIYNSTLILDGVNVSWKALG |
| Photosystem II reaction center protein I | I | 38 | Thermosynechococcus Elongatus (Strain Bp-1) | METLKITVYIVVTFFVLLFVFGFLSGDPARNPKRKDLE |
| Photosystem II reaction center protein J | J | 40 | Thermosynechococcus Elongatus (Strain Bp-1) | MMSEGGRIPLWIVATVAGMGVIVIVGLFFYGAYAGLGSSL |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2020-03-04 Deposition Author(s): Adams, P.D. , Alonso-Mori, R. , Batyuk, A. , Bergmann, U. , Bhowmick, A. , Bogacz, I. , Bolotovski, R. , Brewster, A.S. , Carbajo, S. , Chatterjee, R. , Cheah, M.H. , Chernev, P. , De Lichtenberg, C. , Dobbek, H. , Fransson, T. , Fuller, F.D. , Gul, S. , Holton, J.M. , Hussein, R. , Ibrahim, M. , Kern, J. , Kim, I.-S. , Lassalle, L. , Mendez, D. , Messinger, J. , Moriarty, N.W. , Northen, T.R. , Orville, A.M. , Owada, S. , Pham, C. , Saichek, N. , Sauter, N.K. , Simon, P.S. , Sutherlin, K.D. , Tono, K. , Yachandra, V.K. , Yano, J. , Young, I.D. , Zouni, A.