6VUG
Diabody bound to a reverse transcriptase aptamer complex
PDB DOI: 10.2210/pdb6vug/pdb
Classification: PROTEIN BINDING Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1 , Human Immunodeficiency Virus Type 1
Deposited: 2020-02-15 Deposition Author(s): Arnold, E. , Chesterman, C.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 3 Å
Diabody bound to a reverse transcriptase aptamer complex
Primary Citation of Related Structures: 6VUG
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Reverse transcriptase/ribonuclease H | A | 555 | Homo Sapiens , Human Immunodeficiency Virus 1 , Human Immunodeficiency Virus Type 1 | PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAG |
| REVERSE TRANSCRIPTASE P51 | B | 444 | Homo Sapiens , Human Immunodeficiency Virus 1 , Human Immunodeficiency Virus Type 1 | MAHHHHHHALEVLFQGPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQ |
| Light chain variable fragment | C | 120 | Homo Sapiens , Human Immunodeficiency Virus 1 , Human Immunodeficiency Virus Type 1 | GGGGSDIQMTQSPSSLSASVGDRVTITCRASQDISSYLNWYQQKPGKAPKLLIYYTSSLHSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQYSKFPWTFGQGTKVEIKGSHHHHHH |
| Heavy chain variable fragment | D | 124 | Homo Sapiens , Human Immunodeficiency Virus 1 , Human Immunodeficiency Virus Type 1 | MEVQLVESGGGLVQPGGSLRLSCAASGFSLSTSGIGVTWVRQAPGKGLEWLATIWWDDDNRYADSVKGRFTISADTSKNTAYLQMNCLTAEDTAVYYCAQSAITSVTDSAMDHWGQGTLVTVSS |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (38-MER) | e | 38 | NA | TAATACCCCCCCTTCGGTGCTTTGCACCGAAGGGGGGG |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2020-02-15 Deposition Author(s): Arnold, E. , Chesterman, C.