6VPX
Nanodisc of full-length hiv-1 envelope glycoprotein clone amc011 in complex with one pgt151 fab and three 10e8 fabs
PDB DOI: 10.2210/pdb6vpx/pdb
Classification: VIRAL PROTEIN/IMMUNE SYSTEM Organism(s): Salmonella Enterica , Anoxybacillus Sp. Lm18-11
Deposited: 2020-02-04 Deposition Author(s): Rantalainen, K. , Ward, A.B.W.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 5.0 Å
Nanodisc of full-length hiv-1 envelope glycoprotein clone amc011 in complex with one pgt151 fab and three 10e8 fabs
Rantalainen, K. , Ward, A.B.W.
Primary Citation of Related Structures: 6VPX
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Envelope glycoprotein gp120 | A | 465 | Salmonella Enterica , Anoxybacillus Sp. Lm18-11 | AEQLWVTVYYGVPVWKEATTTLFCASDARAYDTEVHNVWATHACVPTDPNPQEVVLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLRNSSSGEKMEGGEIKNCSFNITTSMRDKVQKEYALFYKLDVVPIKNDNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKIIIVQLNKSVEINCTRPNNNTRKSIHIGPGRAFYTTGEIIGDIRQAHCNISGTKWNDTLKQIVVKLKEQFGNKTIVFNHSSGGDPEIVMHSFNCGGEFFYCNSTQLFNSTWNDTEGSNNTKGNGTIVLPCRIKQIVNMWQEVGKAMYAPPIKGQIRCSSNITGLILIRDGGNNNESTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTKAKRRVVQ |
| Envelope glycoprotein gp120 | E | 465 | Salmonella Enterica , Anoxybacillus Sp. Lm18-11 | AEQLWVTVYYGVPVWKEATTTLFCASDARAYDTEVHNVWATHACVPTDPNPQEVVLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLRNSSSGEKMEGGEIKNCSFNITTSMRDKVQKEYALFYKLDVVPIKNDNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKIIIVQLNKSVEINCTRPNNNTRKSIHIGPGRAFYTTGEIIGDIRQAHCNISGTKWNDTLKQIVVKLKEQFGNKTIVFNHSSGGDPEIVMHSFNCGGEFFYCNSTQLFNSTWNDTEGSNNTKGNGTIVLPCRIKQIVNMWQEVGKAMYAPPIKGQIRCSSNITGLILIRDGGNNNESTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTKAKRRVVQ |
| Envelope glycoprotein gp120 | C | 465 | Salmonella Enterica , Anoxybacillus Sp. Lm18-11 | AEQLWVTVYYGVPVWKEATTTLFCASDARAYDTEVHNVWATHACVPTDPNPQEVVLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLRNSSSGEKMEGGEIKNCSFNITTSMRDKVQKEYALFYKLDVVPIKNDNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKIIIVQLNKSVEINCTRPNNNTRKSIHIGPGRAFYTTGEIIGDIRQAHCNISGTKWNDTLKQIVVKLKEQFGNKTIVFNHSSGGDPEIVMHSFNCGGEFFYCNSTQLFNSTWNDTEGSNNTKGNGTIVLPCRIKQIVNMWQEVGKAMYAPPIKGQIRCSSNITGLILIRDGGNNNESTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTKAKRRVVQ |
| Envelope glycoprotein gp41 | D | 153 | Salmonella Enterica , Anoxybacillus Sp. Lm18-11 | AVGIGAVFLGFLGAAGSTMGAASMTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNTSWSNKSYNQIWNNMTWMEWEREIDNYTSLIYTLIEDSQNQQEKNEQELLELD |
| Envelope glycoprotein gp41 | B | 153 | Salmonella Enterica , Anoxybacillus Sp. Lm18-11 | AVGIGAVFLGFLGAAGSTMGAASMTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNTSWSNKSYNQIWNNMTWMEWEREIDNYTSLIYTLIEDSQNQQEKNEQELLELD |
| Envelope glycoprotein gp41 | F | 153 | Salmonella Enterica , Anoxybacillus Sp. Lm18-11 | AVGIGAVFLGFLGAAGSTMGAASMTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNTSWSNKSYNQIWNNMTWMEWEREIDNYTSLIYTLIEDSQNQQEKNEQELLELD |
| Antibody 10E8 Fab heavy chain | H | 129 | Salmonella Enterica , Anoxybacillus Sp. Lm18-11 | EVQLVESGGGLVKPGGSLRLSCSASGFDFDNAWMTWVRQPPGKGLEWVGRITGPGEGWSVDYAAPVEGRFTISRLNSINFLYLEMNNLRMEDSGLYFCARTGKYYDFWSGYPPGEEYFQDWGRGTLVTV |
| Antibody 10E8 Fab heavy chain | K | 129 | Salmonella Enterica , Anoxybacillus Sp. Lm18-11 | EVQLVESGGGLVKPGGSLRLSCSASGFDFDNAWMTWVRQPPGKGLEWVGRITGPGEGWSVDYAAPVEGRFTISRLNSINFLYLEMNNLRMEDSGLYFCARTGKYYDFWSGYPPGEEYFQDWGRGTLVTV |
| Antibody 10E8 Fab heavy chain | M | 129 | Salmonella Enterica , Anoxybacillus Sp. Lm18-11 | EVQLVESGGGLVKPGGSLRLSCSASGFDFDNAWMTWVRQPPGKGLEWVGRITGPGEGWSVDYAAPVEGRFTISRLNSINFLYLEMNNLRMEDSGLYFCARTGKYYDFWSGYPPGEEYFQDWGRGTLVTV |
| Antibody 10E8 Fab light chain | L | 108 | Salmonella Enterica , Anoxybacillus Sp. Lm18-11 | YELTQETGVSVALGRTVTITCRGDSLRSHYASWYQKKPGQAPILLFYGKNNRPSGVPDRFSGSASGNRASLTISGAQAEDDAEYYCSSRDKSGSRLSVFGGGTKLTVL |
| Antibody 10E8 Fab light chain | N | 108 | Salmonella Enterica , Anoxybacillus Sp. Lm18-11 | YELTQETGVSVALGRTVTITCRGDSLRSHYASWYQKKPGQAPILLFYGKNNRPSGVPDRFSGSASGNRASLTISGAQAEDDAEYYCSSRDKSGSRLSVFGGGTKLTVL |
| Antibody 10E8 Fab light chain | O | 108 | Salmonella Enterica , Anoxybacillus Sp. Lm18-11 | YELTQETGVSVALGRTVTITCRGDSLRSHYASWYQKKPGQAPILLFYGKNNRPSGVPDRFSGSASGNRASLTISGAQAEDDAEYYCSSRDKSGSRLSVFGGGTKLTVL |
| MPER peptide | G | 17 | Salmonella Enterica , Anoxybacillus Sp. Lm18-11 | NWFDITNVLWWIKAVIQ |
| MPER peptide | I | 17 | Salmonella Enterica , Anoxybacillus Sp. Lm18-11 | NWFDITNVLWWIKAVIQ |
| MPER peptide | J | 17 | Salmonella Enterica , Anoxybacillus Sp. Lm18-11 | NWFDITNVLWWIKAVIQ |
| Antibody PGT151 Fab heavy chain | P | 134 | Salmonella Enterica , Anoxybacillus Sp. Lm18-11 | VQLVESGGGVVQPGKSVRLSCVVSDFPFSKYPMYWVRQAPGKGLEWVAAISGDAWHVVYSNSVQGRFLVSRDNVKNTLYLEMNSLKIEDTAVYRCARMFQESGPPRLDRWSGRNYYYYSGMDVWGQGTTVTVSS |
| Antibody PGT151 Fab light chain | Q | 109 | Salmonella Enterica , Anoxybacillus Sp. Lm18-11 | IVMTQTPLSLSVTPGQPASISCKSSESLRQSNGKTSLYWYRQKPGQSPQLLVFEVSNRFSGVSDRFVGSGSGTDFTLRISRVEAEDVGFYYCMQSKDFPLTFGGGTKVD |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2020-02-04 Deposition Author(s): Rantalainen, K. , Ward, A.B.W.