PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6VPX

Nanodisc of full-length hiv-1 envelope glycoprotein clone amc011 in complex with one pgt151 fab and three 10e8 fabs

PDB DOI: 10.2210/pdb6vpx/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1

Deposited: 2020-02-04
Deposition Author(s): Rantalainen, K. , Ward, A.B.W.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 5.0 Å

6vpx
Literature

Nanodisc of full-length hiv-1 envelope glycoprotein clone amc011 in complex with one pgt151 fab and three 10e8 fabs

Rantalainen, K. , Ward, A.B.W.

Primary Citation of Related Structures: 6VPX


Proteins
Molecule Chains Sequence Length Organism Sequence
Envelope glycoprotein gp120 A 465 Homo Sapiens , Human Immunodeficiency Virus 1 AEQLWVTVYYGVPVWKEATTTLFCASDARAYDTEVHNVWATHACVPTDPNPQEVVLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLRNSSSGEKMEGGEIKNCSFNITTSMRDKVQKEYALFYKLDVVPIKNDNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKIIIVQLNKSVEINCTRPNNNTRKSIHIGPGRAFYTTGEIIGDIRQAHCNISGTKWNDTLKQIVVKLKEQFGNKTIVFNHSSGGDPEIVMHSFNCGGEFFYCNSTQLFNSTWNDTEGSNNTKGNGTIVLPCRIKQIVNMWQEVGKAMYAPPIKGQIRCSSNITGLILIRDGGNNNESTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTKAKRRVVQ
Envelope glycoprotein gp120 E 465 Homo Sapiens , Human Immunodeficiency Virus 1 AEQLWVTVYYGVPVWKEATTTLFCASDARAYDTEVHNVWATHACVPTDPNPQEVVLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLRNSSSGEKMEGGEIKNCSFNITTSMRDKVQKEYALFYKLDVVPIKNDNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKIIIVQLNKSVEINCTRPNNNTRKSIHIGPGRAFYTTGEIIGDIRQAHCNISGTKWNDTLKQIVVKLKEQFGNKTIVFNHSSGGDPEIVMHSFNCGGEFFYCNSTQLFNSTWNDTEGSNNTKGNGTIVLPCRIKQIVNMWQEVGKAMYAPPIKGQIRCSSNITGLILIRDGGNNNESTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTKAKRRVVQ
Envelope glycoprotein gp120 C 465 Homo Sapiens , Human Immunodeficiency Virus 1 AEQLWVTVYYGVPVWKEATTTLFCASDARAYDTEVHNVWATHACVPTDPNPQEVVLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLRNSSSGEKMEGGEIKNCSFNITTSMRDKVQKEYALFYKLDVVPIKNDNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKIIIVQLNKSVEINCTRPNNNTRKSIHIGPGRAFYTTGEIIGDIRQAHCNISGTKWNDTLKQIVVKLKEQFGNKTIVFNHSSGGDPEIVMHSFNCGGEFFYCNSTQLFNSTWNDTEGSNNTKGNGTIVLPCRIKQIVNMWQEVGKAMYAPPIKGQIRCSSNITGLILIRDGGNNNESTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTKAKRRVVQ
Envelope glycoprotein gp41 D 153 Homo Sapiens , Human Immunodeficiency Virus 1 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNTSWSNKSYNQIWNNMTWMEWEREIDNYTSLIYTLIEDSQNQQEKNEQELLELD
Envelope glycoprotein gp41 B 153 Homo Sapiens , Human Immunodeficiency Virus 1 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNTSWSNKSYNQIWNNMTWMEWEREIDNYTSLIYTLIEDSQNQQEKNEQELLELD
Envelope glycoprotein gp41 F 153 Homo Sapiens , Human Immunodeficiency Virus 1 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNTSWSNKSYNQIWNNMTWMEWEREIDNYTSLIYTLIEDSQNQQEKNEQELLELD
Antibody 10E8 Fab heavy chain H 129 Homo Sapiens , Human Immunodeficiency Virus 1 EVQLVESGGGLVKPGGSLRLSCSASGFDFDNAWMTWVRQPPGKGLEWVGRITGPGEGWSVDYAAPVEGRFTISRLNSINFLYLEMNNLRMEDSGLYFCARTGKYYDFWSGYPPGEEYFQDWGRGTLVTV
Antibody 10E8 Fab heavy chain K 129 Homo Sapiens , Human Immunodeficiency Virus 1 EVQLVESGGGLVKPGGSLRLSCSASGFDFDNAWMTWVRQPPGKGLEWVGRITGPGEGWSVDYAAPVEGRFTISRLNSINFLYLEMNNLRMEDSGLYFCARTGKYYDFWSGYPPGEEYFQDWGRGTLVTV
Antibody 10E8 Fab heavy chain M 129 Homo Sapiens , Human Immunodeficiency Virus 1 EVQLVESGGGLVKPGGSLRLSCSASGFDFDNAWMTWVRQPPGKGLEWVGRITGPGEGWSVDYAAPVEGRFTISRLNSINFLYLEMNNLRMEDSGLYFCARTGKYYDFWSGYPPGEEYFQDWGRGTLVTV
Antibody 10E8 Fab light chain L 108 Homo Sapiens , Human Immunodeficiency Virus 1 YELTQETGVSVALGRTVTITCRGDSLRSHYASWYQKKPGQAPILLFYGKNNRPSGVPDRFSGSASGNRASLTISGAQAEDDAEYYCSSRDKSGSRLSVFGGGTKLTVL
Antibody 10E8 Fab light chain N 108 Homo Sapiens , Human Immunodeficiency Virus 1 YELTQETGVSVALGRTVTITCRGDSLRSHYASWYQKKPGQAPILLFYGKNNRPSGVPDRFSGSASGNRASLTISGAQAEDDAEYYCSSRDKSGSRLSVFGGGTKLTVL
Antibody 10E8 Fab light chain O 108 Homo Sapiens , Human Immunodeficiency Virus 1 YELTQETGVSVALGRTVTITCRGDSLRSHYASWYQKKPGQAPILLFYGKNNRPSGVPDRFSGSASGNRASLTISGAQAEDDAEYYCSSRDKSGSRLSVFGGGTKLTVL
MPER peptide G 17 Homo Sapiens , Human Immunodeficiency Virus 1 NWFDITNVLWWIKAVIQ
MPER peptide I 17 Homo Sapiens , Human Immunodeficiency Virus 1 NWFDITNVLWWIKAVIQ
MPER peptide J 17 Homo Sapiens , Human Immunodeficiency Virus 1 NWFDITNVLWWIKAVIQ
Antibody PGT151 Fab heavy chain P 134 Homo Sapiens , Human Immunodeficiency Virus 1 VQLVESGGGVVQPGKSVRLSCVVSDFPFSKYPMYWVRQAPGKGLEWVAAISGDAWHVVYSNSVQGRFLVSRDNVKNTLYLEMNSLKIEDTAVYRCARMFQESGPPRLDRWSGRNYYYYSGMDVWGQGTTVTVSS
Antibody PGT151 Fab light chain Q 109 Homo Sapiens , Human Immunodeficiency Virus 1 IVMTQTPLSLSVTPGQPASISCKSSESLRQSNGKTSLYWYRQKPGQSPQLLVFEVSNRFSGVSDRFVGSGSGTDFTLRISRVEAEDVGFYYCMQSKDFPLTFGGGTKVD
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2020-02-04
Deposition Author(s): Rantalainen, K. , Ward, A.B.W.