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6VGE

Crystal structure of the dna binding domains of human transcription factor erg, human runx2 bound to core binding factor beta (cbfb), in complex with 16mer dna cagaggatgtggcttc

PDB DOI: 10.2210/pdb6vge/pdb

Classification: TRANSCRIPTION
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2020-01-07
Deposition Author(s): Hou, C. , Tsodikov, O.V.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 4.25 Å

Literature

Crystal structure of the dna binding domains of human transcription factor erg, human runx2 bound to core binding factor beta (cbfb), in complex with 16mer dna cagaggatgtggcttc

Hou, C. , Tsodikov, O.V.

Primary Citation of Related Structures: 6VGE


Proteins
Molecule Chains Sequence Length Organism Sequence
Transcriptional regulator ERG A 128 Homo Sapiens , Synthetic Construct GPHMPGSGQIQLWQFLLELLSDSSNSSCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFHGIAQALQPHPPESSLYKYPSDLPYMGSYHAHPQKMN
Runt-related transcription factor 2 D 177 Homo Sapiens , Synthetic Construct AELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGEVPDGTVVTVMAGNDENYSAELRNASAVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKVTVDGPREPRRHRQKLDDSKPSLFSDRLSDLGRIPHPSMRVGVPPQNPRPSLNSAPSPFNPQGQSQITD
Core-binding factor subunit beta G 156 Homo Sapiens , Synthetic Construct MGSSHHHHHHSQDPMPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATGTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQEDALAQQA

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*CP*AP*GP*AP*GP*GP*AP*TP*GP*TP*GP*GP*CP*TP*TP*C)-3') b 16 NA CAGAGGATGTGGCTTC
DNA (5'-D(P*GP*AP*AP*GP*CP*CP*AP*CP*AP*TP*CP*CP*TP*CP*TP*G)-3') c 16 NA GAAGCCACATCCTCTG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2020-01-07
Deposition Author(s): Hou, C. , Tsodikov, O.V.