PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6VGD

Crystal structure of the dna binding domain (dbd) of human fli1 and the complex of the dbd of human runx2 with core binding factor beta (cbfb), in complex with 16mer dna cagaggatgtggcttc

PDB DOI: 10.2210/pdb6vgd/pdb

Classification: TRANSCRIPTION
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2020-01-07
Deposition Author(s): Hou, C. , Tsodikov, O.V.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 4.2 Å

Literature

Crystal structure of the dna binding domain (dbd) of human fli1 and the complex of the dbd of human runx2 with core binding factor beta (cbfb), in complex with 16mer dna cagaggatgtggcttc

Hou, C. , Tsodikov, O.V.

Primary Citation of Related Structures: 6VGD


Proteins
Molecule Chains Sequence Length Organism Sequence
Friend leukemia integration 1 transcription factor A 104 Homo Sapiens , Synthetic Construct GPHMPGSGQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFHGIAQALQPHPTE
Runt-related transcription factor 2 D 177 Homo Sapiens , Synthetic Construct AELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGEVPDGTVVTVMAGNDENYSAELRNASAVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKVTVDGPREPRRHRQKLDDSKPSLFSDRLSDLGRIPHPSMRVGVPPQNPRPSLNSAPSPFNPQGQSQITD
Core-binding factor subunit beta G 156 Homo Sapiens , Synthetic Construct MGSSHHHHHHSQDPMPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATGTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQEDALAQQA

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*CP*AP*GP*AP*GP*GP*AP*TP*GP*TP*GP*GP*CP*TP*TP*C)-3') b 16 NA CAGAGGATGTGGCTTC
DNA (5'-D(P*GP*AP*AP*GP*CP*CP*AP*CP*AP*TP*CP*CP*TP*CP*TP*G)-3') c 16 NA GAAGCCACATCCTCTG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2020-01-07
Deposition Author(s): Hou, C. , Tsodikov, O.V.