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6V80

Crystal structure of human cd1d presenting alpha-galactosylceramide in complex with nkt12 tcr and vhh nanobody 1d12

PDB DOI: 10.2210/pdb6v80/pdb

Classification: IMMUNE SYSTEM
Organism(s): Salmonella Enterica , Klebsiella Phage Phiko2

Deposited: 2019-12-10
Deposition Author(s): Rossjohn, J. , Shahine, A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.53 Å

Literature

Crystal structure of human cd1d presenting alpha-galactosylceramide in complex with nkt12 tcr and vhh nanobody 1d12

Rossjohn, J. , Shahine, A.

Primary Citation of Related Structures: 6V80


Proteins
Molecule Chains Sequence Length Organism Sequence
Antigen-presenting glycoprotein CD1d A 347 Salmonella Enterica , Klebsiella Phage Phiko2 MQRLFPLRCLQISSFANSSWTRTDGLAWLGELQTHSWSNDSDTVRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSAGCEVHPGNASNNFFHVAFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLLNGTCPQFVSGLLESGKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWMRGEQEQQGTQPGDILPNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYWGSLVPRGSGSRIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVMNHGSGLNDIFEAQKIEWHEHHHHHH
Antigen-presenting glycoprotein CD1d F 347 Salmonella Enterica , Klebsiella Phage Phiko2 MQRLFPLRCLQISSFANSSWTRTDGLAWLGELQTHSWSNDSDTVRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSAGCEVHPGNASNNFFHVAFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLLNGTCPQFVSGLLESGKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWMRGEQEQQGTQPGDILPNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYWGSLVPRGSGSRIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVMNHGSGLNDIFEAQKIEWHEHHHHHH
Beta-2-microglobulin B 100 Salmonella Enterica , Klebsiella Phage Phiko2 MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM
Beta-2-microglobulin G 100 Salmonella Enterica , Klebsiella Phage Phiko2 MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM
T cell receptor alpha variable 10, nkt tcr alpha chain fusion C 210 Salmonella Enterica , Klebsiella Phage Phiko2 HMKNQVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYICVVSDRGSTLGRLYFGRGTQLTVWPDIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDTFFPSPESS
T cell receptor alpha variable 10, nkt tcr alpha chain fusion H 210 Salmonella Enterica , Klebsiella Phage Phiko2 HMKNQVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYICVVSDRGSTLGRLYFGRGTQLTVWPDIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDTFFPSPESS
nkt tcr beta chain D 241 Salmonella Enterica , Klebsiella Phage Phiko2 DIYQTPRYLVIGTGKKITLECSQTMGHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSHTSQYLCASTSRRGSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWGRAD
nkt tcr beta chain I 241 Salmonella Enterica , Klebsiella Phage Phiko2 DIYQTPRYLVIGTGKKITLECSQTMGHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSHTSQYLCASTSRRGSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWGRAD
Nanobody VHH ID12 E 119 Salmonella Enterica , Klebsiella Phage Phiko2 QVQLVESGGGLVQAGGSLRLSCAASGSMFSDNVMGWYRQAPGKQRELVATIRTGGSTNYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCRHTIPVPSTPYDYWGQGTQVTVSS
Nanobody VHH ID12 J 119 Salmonella Enterica , Klebsiella Phage Phiko2 QVQLVESGGGLVQAGGSLRLSCAASGSMFSDNVMGWYRQAPGKQRELVATIRTGGSTNYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCRHTIPVPSTPYDYWGQGTQVTVSS
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2019-12-10
Deposition Author(s): Rossjohn, J. , Shahine, A.