6TJV
Structure of the ndh-1ms complex from thermosynechococcus elongatus
PDB DOI: 10.2210/pdb6tjv/pdb
Classification: MEMBRANE PROTEIN Organism(s): Polytomella Sp. Pringsheim 198.80
Deposited: 2019-11-27 Deposition Author(s): Gamiz-Hernandez, A.P. , Kaila, V.R.I. , Kurisu, G. , Nowaczyk, M.M. , Saura, P. , Schuller, J.M. , Schuller, S.K. , Thiemann, J.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.2 Å
Structure of the ndh-1ms complex from thermosynechococcus elongatus
Gamiz-Hernandez, A.P. , Kaila, V.R.I. , Kurisu, G. , Nowaczyk, M.M. , Saura, P. , Schuller, J.M. , Schuller, S.K. , Thiemann, J.
Primary Citation of Related Structures: 6TJV
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| NAD(P)H-quinone oxidoreductase subunit 1 | A | 372 | Polytomella Sp. Pringsheim 198.80 | MESGIDLQGQFISALQSLGLSHDLAKLLWLPLPMLMMLIVATVGVLVAVWLERKISAAVQQRIGPEYIGPLGILAPLADGLKLIFKEDVLPANSDRWLFTLGPAVVVIPVFLSYIIVPFGQNLLISNLAMGVFLWIALSSIAPIGLLMAGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAVAMMSNGLGTVEIVEQQSQYGILSWNVWRQPIGFLVFWIAALAECERLPFDLPEAEEELVAGYQTEYAGMKFALFYLGAYVNLVLSALLVSVLYFGGWSFPIPLETIANLLGVSETNPFLQIAFAVLGITMTLIKAYFFVFLAILLRWTVPRVRIDQLLDLGWKFLLPVGLVNLLLTAGLKLAFPVAFGG |
| NAD(P)H-quinone oxidoreductase subunit J | J | 168 | Polytomella Sp. Pringsheim 198.80 | MSDTPEAPIVEAGPVGRLLQSQNLSVESLGRDASGVEMIKVDRDRLLAVCQTLYADGFNYLRCQAAYDSGPGQDLVSTYHLIKLSDNADRPPEVRIKVFVPRDDPRVPSVYWIWKTADWQERESYDMFGIVYEGHPNLKRILMPEDWVGWPLRKDYITPDFYELQEAY |
| NAD(P)H-quinone oxidoreductase subunit K | K | 237 | Polytomella Sp. Pringsheim 198.80 | MTNTTSPAILNPIARPEVPQELAENIILTSLNDVYDWARLSSLWPLMYGTACCFIEFAAMIGSRFDFDRFGLVPRNSPRQADLIITSGTITMKMAPALVRLYEQMPSPKYVIAMGACTITGGMFSSDSYSAVRGVDKLIPVDVYLPGCPPRPEAIMDAIVKLRKKIANEHINERGNLAQTHRLFTAKHKMKPVPPILTGQYLNAPSRQAPPPALAAAMGIAVPALGEAVSETTSVAE |
| NAD(P)H-quinone oxidoreductase subunit L | L | 76 | Polytomella Sp. Pringsheim 198.80 | MAVSTELLVLGVYGALAGLYLLVVPAIVYAYLNARWYVASSFERAFMYFLVTFFFPGLLLLAPFINFRPQPRSLNS |
| NAD(P)H-quinone oxidoreductase subunit M | M | 111 | Polytomella Sp. Pringsheim 198.80 | MLLKSTTRHVHIYAGHVVDGEVHPDTETLTLNVDPDNELEWNEAALAKVEAKFRELVANAAGEDLTEYNLRRIGSDLEHFIRSLLMQGEIGYNLNSRVRNYSLGIPRVNHS |
| NAD(P)H-quinone oxidoreductase subunit N | N | 150 | Polytomella Sp. Pringsheim 198.80 | MGLLAGYQFVKDLESAGALALFVPPEGGFEGRYQRRLRSKGYTTLPMSAPGLGDLAAYLTQEHGIRPAHTGKEDIRVYFQPPLVTYHLENLPPNAKGLVLWLIDGKRLSKQEFAYLAQLTQTLPKFKVVVEVGGDRVVRWEPLADWVAAA |
| NAD(P)H-quinone oxidoreductase subunit O | O | 70 | Polytomella Sp. Pringsheim 198.80 | MAIKKGDLVKVVAEKLANSLEALASDHRYPPYLFEGRGEVVDIRGDYAQIKFPVPTPTVWLRLDQLEVAQ |
| Tlr0906 protein | P | 437 | Polytomella Sp. Pringsheim 198.80 | MVQAMERPSSAKLPPLDHPLADIIYRLEAGGALIPDTPVNLMKIIGMYKAYSIPMDFYWRDLLYLGERVFINPFPFFKYFPTKEYFELPNHYAGDTADLRIWRGPAHAHPELMEFIEKGETGKMPRLLHHLWHDRINMEFSEDLARAMMWHRMGGQLDIYLDSEEYKAAADKAIRAYFKRNPLMLGLYKLFPDLFLEQARQATYMNVLGLFWEVMAPVFFEISDRYDEGSITSVKDAMNFLVNGIFAIAGRPIYHHVYIDDEVHVLVPKEKGFMWLYEAAFPYVEAVFYRTSPFRGTKSYNAQANQVPTDQVDFHYGILFADKFPVGTAGIPPTLLHQDMYHFLPQYLKDYFHQHCRGEDDILVQLGIAFQHAMYTVTSAVLQATRAAFYYPLDDPNPEHLMANRRFFVAQMDRFLRPQYGIAEACKIRNVQDPNYL |
| Tll0220 protein | Q | 149 | Polytomella Sp. Pringsheim 198.80 | MATIVDIAVNTPGFSTLVTAVKVANLVEALQSPGPFTVFAPNDDAFAKLPDGTITSLVQNPPQLGRILKYHVVAGAYKATDLKRMGIVTSLEGSTIPIHGDNPLEVKNATVLAADIEAENGIIHVIDTVILMGLDPAHSFQETNIPYKV |
| Tlr0636 protein | S | 110 | Polytomella Sp. Pringsheim 198.80 | MIRPIADTYPLLPLSKAQMGQRQEIINSHKRLWDKTMATDLIMTILPGMTVKVTNPNDTYYQFQGIVQRITDGKVAVLFEGGNWDKLVTFQASELEPVVVTPKEKAKAKK |
| NAD(P)H-quinone oxidoreductase subunit 2 | B | 515 | Polytomella Sp. Pringsheim 198.80 | MDLVTLAGQLNAGTILPETILIVTLLVVLLADLIQGRQADRWTPYFAIVGLGGAIATMIPLWTQPATISFFGSFISDHLSLFFRGLIALSALGTILMSIRYVEQTGSSLGEFMTILLTATVGGMFIAGAQELVFIFVALETLSIASYLLTGYTKRDSRSNEAALKYLLIGAASSAIFLYGSSLLYGLSGGHTQLPAIAQALSSESLGLVVALVFVIAGISFKISAVPFHQWTPDVYEGAPTPVVAFLSVGSKAAGFALAIRFLTLAFPSVTDQWQLIFTVLAILSMILGNVVALAQTSMKRMLAYSSIGQAGFVMIGFVVGTEAGYASMLFYLLVYLFMNLGAFTCVILFSLRTGTDQISEYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGKIYLFWAGWQAGAYGLVLLGLLTSVISIYYYIRVVKMMVVKEPQEMSEAVRNYPEVSWSSFGLRPLQVGLVMTVIATSLAGILANPLFNLVNTAVWDVPQLANQPTVMEVAYQALSPAGKS |
| NAD(P)H-quinone oxidoreductase subunit 3 | C | 132 | Polytomella Sp. Pringsheim 198.80 | MVAIPRLRDTATVFVLSGYEYFLGFLIICSLVPVLALAASALLRPKSGRMIRLTTYESGMEPIGGAWIQFNVRYYMFALVFVIFDVETVFLYPWAVAFHQLGLLAFIEALIFIAILVVALVYAWRKRALEWS |
| NADH dehydrogenase subunit 4 | D | 501 | Polytomella Sp. Pringsheim 198.80 | MLHSLRFLPMLTLLIVLPVIGALLMPLLPERVLRSVALVIAGLTFALSLWMLTQFDVHQSALQFTEFVPWLLPLGLNYSLGVDGLSLPLIVLGTFLTLGVVFTGEKTGQRLFYALVLLANAGITGALAAQNLLLFFLFYELELVPFYLLILIWGGQRREQAAVKFLIYTAVSGILVLAAFLAMGWLTHAPSFDSADIQIAGLAPTTQGILLLLLILGFGIKMPLVPLHSWLPDAYVEASTPTAILLGGALAKLGAYGLVRFALGYFPEAWAQFSGLLAIVAAVGIAYGALAAIAQKDIKRMVAYSSIGHMSYVLLAAAAHTHLSMVGAIAQMISHGLILALLFYLVGVIETKVGTRELNVLNGLLNPLRGLPTTSALLILGGMASAGIPGLVGFVAEFLIFQGSYGMFPLPTLVAVVGTGLTAVYFVIMINRTCFGRLDNRTAYYPRVVWSEKMPALVLTLLIVFLGVQPTWLVRWSETTSAQIVAAVPRTNELVATLAKR |
| NAD(P)H-quinone oxidoreductase subunit 4L | E | 101 | Polytomella Sp. Pringsheim 198.80 | MQLTYVLILAALLFCIGIYGLVTSRNAVRVLMSIELLLNAVNLNLIGFANYLDGQQIKGQVFAVFVITVAAAEAAVGLAIILAIYRNRDTVDMEKFNLLKW |
| NADH dehydrogenase subunit 5 | F | 611 | Polytomella Sp. Pringsheim 198.80 | MLQSFADTVWLIPFYSLAGMVLSLIWSPGITRKTGPRPAGYLNILLTFFSFVHALLATVAIANQPPQYLHWTWLDVAGLHLDIPVEISILTTTALMLITALNLMAQVFAVGYMEMDWGWARFFALLALFEGGMGALVLLDSLFFNYVVLEILTLATYLLIGLWFNQPLVVTGARDAFLTKRVGDLVLLMGVLAIYPLAGSWNYDDLAAWAATAQVNSTLITLICLALIAGPMGKCAQFPLHLWLDEAMEGPIPASILRNAVVVATGAWVLVKLTPVLSLSPVALTALLVIGSVTALGGTLIAIAQVDIKRALSYLVSAYMGWVFIAVGLKEPGLAFVFILTYSLAMAVLMMSIGSIIWNSVTQDLRLLGGLWSRRPISGISFLVGSAGLLAVPPLASFFPQAELLDTAFAQLPWVGGVLLLMNTFAAFSLGRTFCLVWGGEVKPMTARSPEVFWPMILPMTVDLGLVLHLPILMARFDWVIWTQPSLATAAALTITALLGWGVAAWVYLGKAIPKPVQFPLPSVQNLLAYDFYTPKLYRATVVGVVDMISRITAWFDRTFVDGTGNAFGVVTLLGGDRLKYSTTGQSQAYILTILMGIAILVIAICWPLLA |
| NADH dehydrogenase subunit 6 | G | 200 | Polytomella Sp. Pringsheim 198.80 | MDLATLTQTITFFALAAAVIIAALGVVLLDNVVYSAFLLGGVFLSIAGLYILMNADFVSAAQILIYVGAVNVLILFAIMLVNKRETYTPVPGRWLRQGGAAVVSLGVFALLTKMILQTPWQLSSVPPTPDSITTIGQHFFSDFLLPFELASVLLLMALIGAVVLARRELVLEPEPILGEEVVPPLELPERPREPVALSEK |
| NAD(P)H-quinone oxidoreductase subunit H | H | 394 | Polytomella Sp. Pringsheim 198.80 | MPKIETRTEPMVINMGPHHPSMHGVLRLMVTLDGEDVIDCEPVIGYLHRGMEKIAENRTNIMFIPYVSRWDYAAGMFNEAVTVNAPEKLAGIPVPKRASYIRVIMLELNRIANHLLWLGPFLADVGAQTPFFYIFREREYIYDLFEAATGMRFINNNYFRIGGVAADLTYGWVTKCRDFCDYFLPKVDEYERLITNNPIFVRRLQGVGKISREEAINWGLSGPMLRASGVKWDLRKVDHYECYDDFDWDVPVATEGDCLARYIVRIQEMRESVKIIRQALDGLPGGPYENLEAKRMLEGAKSEWNGFDYQYIGKKLSPTFKIPKGEHYVRVESGKGELGIYLIGDDNVFPWRWKIRPPDFNNLQVLPQLLKGMKVADIVAILGSIDVIMGSVDR |
| NAD(P)H-quinone oxidoreductase subunit I | I | 196 | Polytomella Sp. Pringsheim 198.80 | MKFLNQITNYAKEAVQSAKYIGQGLSVTFDHMRRRPITVQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPINLPVVDWVFNKELKKKELKHYSIDFGVCIFCANCVEYCPTNCLSVTEEYELATYDRHELNYDSVAMGRIPYKVTQDPMVTPIREFAYLPAGVMSGHDLPAGAQRAGERPEAIANTAKSSEN |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2019-11-27 Deposition Author(s): Gamiz-Hernandez, A.P. , Kaila, V.R.I. , Kurisu, G. , Nowaczyk, M.M. , Saura, P. , Schuller, J.M. , Schuller, S.K. , Thiemann, J.