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6TEM

Cenp-a nucleosome core particle with 145 base pairs of the widom 601 sequence by cryo-em

PDB DOI: 10.2210/pdb6tem/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Homo Sapiens , Synthetic Construct , Xenopus Laevis

Deposited: 2019-11-12
Deposition Author(s): Bednar, J. , Boopathi, R. , Danev, R. , Petosa, C.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.9 Å

6tem
Literature

Cenp-a nucleosome core particle with 145 base pairs of the widom 601 sequence by cryo-em

Bednar, J. , Boopathi, R. , Danev, R. , Petosa, C.

Primary Citation of Related Structures: 6TEM


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3-like centromeric protein A A 140 Homo Sapiens , Synthetic Construct , Xenopus Laevis MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLEEGLG
Histone H3-like centromeric protein A E 140 Homo Sapiens , Synthetic Construct , Xenopus Laevis MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLEEGLG
Histone H4 B 103 Homo Sapiens , Synthetic Construct , Xenopus Laevis MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 103 Homo Sapiens , Synthetic Construct , Xenopus Laevis MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A C 129 Homo Sapiens , Synthetic Construct , Xenopus Laevis SGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESSKSAKSK
Histone H2A G 129 Homo Sapiens , Synthetic Construct , Xenopus Laevis SGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESSKSAKSK
Histone H2B 1.1 D 125 Homo Sapiens , Synthetic Construct , Xenopus Laevis PEPAKSAPAPKKGSKKAVTKTQKKDGKKRRKSRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone H2B 1.1 H 125 Homo Sapiens , Synthetic Construct , Xenopus Laevis PEPAKSAPAPKKGSKKAVTKTQKKDGKKRRKSRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Widom 601 DNA (145-MER, sense) i 145 NA TGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCTG
Widom 601 DNA (145-MER, antisense) j 145 NA CAGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCCA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2019-11-12
Deposition Author(s): Bednar, J. , Boopathi, R. , Danev, R. , Petosa, C.