6RFR
Cryo-em structure of respiratory complex i from yarrowia lipolytica at 3.2 a resolution
PDB DOI: 10.2210/pdb6rfr/pdb
Classification: OXIDOREDUCTASE Organism(s): Yarrowia Lipolytica
Deposited: 2019-04-16 Deposition Author(s): Parey, K. , Vonck, J.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.2 Å
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Subunit NIAM of NADH:Ubiquinone Oxidoreductase (Complex I) | A | 149 | Yarrowia Lipolytica | MLSRRAVTMLRSPVARVAQVQVRGIRASFDKAEEPMLGDYPDIDPFPAQLKNPYKKYDDQQDRRNLEEPLSVNDDLYDMWSPDRFTHFKNQDALKYFIGFLTIFFGASYVATYFVPEKAAIPREFPYEGLWKESGGTEKSKAFFGQRSE |
| Subunit NB5M of NADH:Ubiquinone Oxidoreductase (Complex I) | J | 93 | Yarrowia Lipolytica | MVELKPSSAIQRGPLNKGGWDAPHALHNDGAIDRYAHWRTFYQERFKYTRATGKSTLIFLVAFPALIGYVAYQSEGLFEFAGKRRGESVTTRG |
| Subunit NUKM of NADH:Ubiquinone Oxidoreductase (Complex I) | K | 210 | Yarrowia Lipolytica | MLRSQIGRLALRPTLVPATVIPQTRAYSAPAGTPRVSSSSMPTDFPLPSQQKPNSAVDYTLTTLDAVANWARQGSFWPVTFGLACCAVEMMHVSAPRYDQDRLGIIFRASPRQSDIMIVAGTLTNKMAPVLRQVYDQMPEPRWVISMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGVFQLQRKMRNTKITRMWYRK |
| Subunit NULM of NADH:Ubiquinone Oxidoreductase (Complex I) | L | 89 | Yarrowia Lipolytica | MFIGTIILVLSFLGFVFNRRNIILAFICLETMLLGINLILLRNSVLFDDISGSLFAIVIIILAGVESAIGLSLLVSYYRLRGVINSYGI |
| Subunit NUMM of protein NADH:Ubiquinone Oxidoreductase (Complex I) | M | 136 | Yarrowia Lipolytica | MLSRFVSKRAFSVSTQVSKSIISYNGNTIEIPEEYTKQAPNRDSTWAPAQASKTEIYKNNMVRFEQKDLSKQPMPYAGIELIAQQPVRFVHGNTAVCDGANHNGPGAQGHPKIFINVDAPGSHACQYCGTRYEKEH |
| Acyl carrier protein ACPM1 of NADH:Ubiquinone Oxidoreductase (Complex I) | O | 109 | Yarrowia Lipolytica | MLRNVSRLALRSNFARQATMGQRFYSVARPDAEKRIAAVLESFDKISNPAAITPTASFAKDLNLDSLDTVEVVVAIEEEFGIEIPDKEADEIKSVNQAVEYILAQPDAK |
| Subunit NB4M of protein NADH:Ubiquinone Oxidoreductase (Complex I) | P | 124 | Yarrowia Lipolytica | MAIIATAFAETVKFSGSKQELQKRTLALYRQFLRGAPTFADLYEVQFSIPTIRTKIRQEFERHRFVDDLSIQNVLYAKGHMEYQECINFWKQQAQFLKYFPEEDDIQGRHQPSNFVDKFLKNRA |
| Acyl carrier protein ACPM2 of NADH:Ubiquinone Oxidoreductase (Complex I) | Q | 132 | Yarrowia Lipolytica | MLRQSVLRLSRAAVARPALSRSFVTAVARPQLVRAAPVSFIRHYSSAHVLTKDMIQERIVALLESFDKVNDAKNITATANLTSDLGLDSLDVVEVVMAIEEEFGLEIPDHDADEIKTVQQAIDYVSAQPAAV |
| Subunit NI2M of NADH:Ubiquinone Oxidoreductase (Complex I) | R | 109 | Yarrowia Lipolytica | MSHPVPFSAANKKLVTSMYRQSLKLARNWISNRQLFRQKAVEIRHKFDQNAQISNPRLLARTLDETRAHLYEFRHPDPIVPPSFPGGTKYERNVPPRMEKIMQHNLYEP |
| Subunit NESM of NADH:Ubiquinone Oxidoreductase (Complex I) | S | 249 | Yarrowia Lipolytica | MLKLHYRNFITAQHSTTNTTPTMIASVCKRAGLRAGPRAYPGVRQFALRAYNEEKELALKQRLSQLPPPGKAFVTAEGEPRPAKEAELAELAEIAALYKTDRVGILDILLLGNKHARLYRDNTALLKDYYYNGRRILDKIPVKDKQTGKVTWEIKREGAEKEDWVNQMYFLYAPSLILLLIVMVYKSREDITFWAKKELDQRVLDKHPEINDAPENERDALIVERIIAGDYDKLASLQKKATPTPATLI |
| Subunit NUPM of NADH:Ubiquinone Oxidoreductase (Complex I) | U | 172 | Yarrowia Lipolytica | MPREAAAHWVPFEDKANMPDNVPDVVEVGATSAPLLSASYFIGAKCKPYNDDFMLCREESQGSGAIDCLKEGRRVTRCAVSVIEDINKSCLDEFRLHWQCLEQNNHQLSGCRKAEALLNKCVFTKLNLEKKIPGLRPDEEPVFLKKDPWIKPAVDDFKSVRAYAEAKKNGTL |
| Subunit NEBM of NADH:Ubiquinone Oxidoreductase (Complex I) | B | 74 | Yarrowia Lipolytica | MALFTSLVGASGLGFATKFLSNKIRLKPAGYYPLGYVFSGVAWAGLGLVLHNVHQHSLEVLEKKKTALSEQRTE |
| Subunit NB6M of NADH:Ubiquinone Oxidoreductase (Complex I) | W | 123 | Yarrowia Lipolytica | MPSVGQDLPPVGGYEPVQWRRNLPARGFRPLVYLAALCGICGYGFYRALGGIQERRELKREKLWARIYLMPLLQAEEDRQTVRRSIAQLEREKEIMKGTGFDVDKSVYNDGKFHAPALMIPPK |
| Subunit NUXM of NADH:Ubiquinone Oxidoreductase (Complex I) | X | 169 | Yarrowia Lipolytica | MSSSTPLVKTSVNYSYGDYPLIDADPHFKRVVGYMRPSDYGVIGLATAALPAGICFAEWLDPVKGKFARPSVKFLRVATMLGFAVGFGAAYARSSLRFFGVTENAREYKKDEAQMAARKAAGLEPYGTSSLTPELQEIAAKNSAHSIAGLFIFPWFNFVNHPYHGREQK |
| Subunit NUYM of NADH:Ubiquinone Oxidoreductase (Complex I) | Y | 161 | Yarrowia Lipolytica | MLSRSLRQLSQPSVRSFATSARLLQKKDVPEVGVNLDNVPAHEIVSGAPAELSRNRVVRIYQQAKPATQSGEYGTFAWRLDWDIVDVANRWENDLIGWQSSGDYMQATQMKFTSKESAIKFANKQGWDFYIQEPHHRKFRVKQYANNFVHSYGKLKHIRTK |
| Subunit NUZM of NADH:Ubiquinone Oxidoreductase (Complex I) | Z | 182 | Yarrowia Lipolytica | MLPGGPVPVFKKYTVGSKGIWEKLRVLLAIAPNRSTGNPIVPLYRVPTPGSRPEANVYQDPSSYPTNDIAENPYWKRDHRRAYPQTAFFDQKTVTGLLELGSEATPRIADGEAGTKALANIANGGVSFTQALGKSSKDVIYGEVLTVNGLPPVAPTLAPKQWKIIEGEAAIYPKGYPCRTFH |
| Subunit NUCM of NADH:Ubiquinone Oxidoreductase (Complex I) | C | 466 | Yarrowia Lipolytica | MLRSAAARAVRAVRPRLSARYMATTALPQDPIPSGALGQKVPHVDESHQDLLFRTSHMVEDLETYDEDSPINTSDANTRIRAFTINFGPQHPAAHGVLRLILELSGEEIIRSDPHVGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMTNEQVFSLAVEKLLNVEVPLRGKYIRTMFGEITRVLNHLMSVCSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPAGLLDDIYMWATQFGDRLDEIEELLTDNRIWKLRTVNIGTVTAQDALNLGLSGPMLRGSGIPFDIRKNAPYDAYDKVDFDVPVGMNGDCYDRYLIRMAEFRQSLRIIEQCCNDMPAGAVKVEDFKINSPPRNLMKEDMEALIHHFLLYTKGYSVPPGETYTAIEAPKGEMGVYVVSDGSERPYKCKIRAPGFAHLGAFDHIARGHFLPDAVAIIGTMDLVFGEVDR |
| Subunit NIMM of NADH:Ubiquinone Oxidoreductase (Complex I) | D | 87 | Yarrowia Lipolytica | MAIPFEALLPYGIIFGLLTAGGGAMQVLHVYRNGGVRDRFAIDQWDSQMMERDLRLNGGQGRKQVDQATAPEAFKHNHVWKSERPLI |
| Subunit NUEM of NADH:Ubiquinone Oxidoreductase (Complex I) | E | 375 | Yarrowia Lipolytica | MLRTTRAVKPLKAITTSVRFMNSFENLAQDVNITRSGKTLIAKGTGGRSSRTGYTATVFGANGFLGSYLTAKLAKHGTTVVVPYREEMAKRHLKVTGDLGVVNFLEMDLRNLESIDEAVRHSDIVVNLIGREYETKNFNYYDVHVEGARRIAEAVKKHNIARYIHVSAFNAEIDSPSEFNHTKGLGEQVTKDIVPWATIVRPAPMFGREDKWFLDRMARSPCLVSANKFQETSNPVHVIDVAAALERICFDDSTVAQTFELYGPQKFTQKQIIDMVSETLRKEVRHIELPKALYQAYTKATQAIWWPTYSPDQVERQFLSQKIDPSAKTFNDLDLTPMELPDLMFKLIRPYRVNTFQHDVSQLENKEKTFVHILD |
| Subunit NUFM of NADH:Ubiquinone Oxidoreductase (Complex I) | F | 144 | Yarrowia Lipolytica | MRYTQLLRNVSKGVQKSGQSVLVQMREGTPIGLTGIYQHPNPRPALIALYEATLKELQDKHPKDSVYRQSIENLTAHRKQIVEDNEVSEVIENKIGAGLIEEVVIQAHEELELAKKMSEWKPWEELEEKPLEDQWVYFNKKGVE |
| Subunit NUGM of NADH:Ubiquinone Oxidoreductase (Complex I) | G | 281 | Yarrowia Lipolytica | MLSRFARIGSMGIRPVAAARATFVTSARAAQAAPSWENIKDIRLDPKVHVDEVYEPIVNPADRYLQHVSDLHQYAKYIMAALPKYIQGFSVWKDELTLHVAPSAVIPVTTFLRDNTSTQYKSIIDITAVDYPSRENRFEVVYNFLSVRHNSRIRLKTYATEVTPVPSITCLYEGANWFEREAYDMYGVFFEGHPDLRRIMTDYGFEGHPLRKDFPLTGYTEVRWDEEKRRVVYEPLELTQAFRNFSAGSTAWEPVGPGRDDRPDSFKLPTPKPEEKEGDKK |
| Subunit NUHM of NADH:Ubiquinone Oxidoreductase (Complex I) | H | 243 | Yarrowia Lipolytica | MLRLIRPRLAALARPTTRAPQALNARTHIVSVHRNTENNNPSIPFEFSPENMKRAEEVIAKYPPQYKKAAVMPLLDIGQRQLGYTSISVMNYVAKLLEMPPMRVYEVATFYTMYNRTPMGRYHLQICTTTPCQLCGSDGIMEAVQNTLNIKPGETTKDNLFTLSEVECLGACVNAPMMAINDDYYEDLTPEGTVKLLEDCKAGKMPTPGPENHVRRDCEPASGQKVLLSKEPHNVADFLQEGI |
| Subunit NUIM of NADH:Ubiquinone Oxidoreductase (Complex I) | I | 229 | Yarrowia Lipolytica | MLSLVRPAVTRSILRGAPGSMRLLSSTARLHAPATDSAINIYAGGSAAAAPPAGFRIHRPATWEESEEGALSKATKYFLLAEMFRGLYVVLEQFFRAPYTIYYPFEKGPVSPRFRGEHALRRYPSGEERCIACKLCEAICPALAITIDAEERIDGSRRTTKYDIDMTKCIYCGYCQESCPVDAIVETPNVEYATETREELLYNKEKLLANGDKWELELQYALDADAPYR |
| Subunit NUNM of NADH:Ubiquinone Oxidoreductase (Complex I) | N | 120 | Yarrowia Lipolytica | FGSHGHGPELTPAVPFFQPYVLKWAGVSLGLVAFYQFNSSYEAKNGHTWVETFFHPKSREDILNEEAKIVQALNNQRELTIKMHELKREEKDYAHSYSPLFSDPVPQGGSIGKAPGSSRE |
| Subunit NU1M of NADH:Ubiquinone Oxidoreductase (Complex I) | 1 | 341 | Yarrowia Lipolytica | MIINIVEILIFLVCVLFSVAYLTVAERKTLAYMQRRLGPNFVGYYGLLQAFADAVKLLLKEIVLPKESNYIILVISPLITLITALIGWVVIPLGPGITLGELNLGILFSLAIGSLGVFGSLLSGWSSNSKYSLLGSIRSTAQLISYELILTSIFIIIIMFVSSLNITTIIETQRVVWYCIPLLPLLLIFFIASVAETARPPFDLTESESELVAGYFTEYSGSPFVFFFLAEYSNIILISAFNGYLLLGGYLSFNYSYLFNILFNDYSYVSFLFEGLINSSAYAIKLVFLMFSFIWVRAAFPRFTYDNLINFCWIILLPLLFGIFLIIPSTLYIFDSFPTLI |
| Subunit NU2M of NADH:Ubiquinone Oxidoreductase (Complex I) | 2 | 469 | Yarrowia Lipolytica | MLILAIISLITFVSMSKLSDNRAIIRLINIYLILVLVLDSFLYLLFLNNQTYTVMGELLIFNSFTFYIDMLIYFIMIVISSLYGYNLYNNNLYKTLFEPKKELIILFLINILGALLIVHSNDFITLFVAIELQSYSIYLITAIYNSSYKASKASMLYFFMGGILSILIAYSINTYYSVLNSYTLHSLDSLIINTLDLNLILIALSLGLLFKIGIAPLHKWLISIYENTPILITIYISLIPKISILSYLVLSNISINSLVISILAILTLLVGSVGGLLQIKIKRLLAFSGLTNAGYMMLLLLLNNNEFSYLYYITQYSISHLAIFMIIIFSIYYINYINNQYNPIIYVNQLKGLIHDNAYLVLSMAIVVFSFIGIPPLLGFFGKLNILMSILNNGYYFISIVLIVASLISALYYLYLLNVSIQDKNNILINSNETVSSVLSYILSSLIILITFGFIYNSLIIDIFNVYFN |
| Subunit NU3M of NADH:Ubiquinone Oxidoreductase (Complex I) | 3 | 128 | Yarrowia Lipolytica | MNTFIIFIILIPIVGFALLAVNILLAVYKPYNEKLGAFECGLTSFNQTRLAFNAAFILVAILFLPFDLEISTLLPYVMSIYLVSNYGFTIVLLFLLILIIGFVYEINTNALKINKHNKPNTDSLIYKL |
| Subunit NU4M of NADH:Ubiquinone Oxidoreductase (Complex I) | 4 | 486 | Yarrowia Lipolytica | MFLTSILLSSLYLFNRILAWQGNVKHFYLFASNLLLLFIVVLYINFNTFSNSFQFNFELFNSLNPFGLSNSDISNGLLFGIDGLSLTFILLTVLLIPLTLLGNWYNINFNSNLYYTLVLAIGLVILLNFWALDYISFYILFEATLPLLFILIHIYGSSDSERASFYVLMFTLSGSLFMLLSIVVISIVLNTTNFINHNLFVLSLDLQTIIWLGLFIAIMVKTPLFPIHVWLPVVHSESPLAGSMILAGLILKLALYAILRLLLPLLCEAQILYTPMIYIISLLTIILTSLATLRQIDLKVIIAYSSISHMGIAILGVCSNTSLGIYGSIVLGVAHGFVSPALFLIVGGILYDRYHIRIVNYYKGLTTYMPQLATYIIILSFANIGTPLTGNFTGEFLSLQGGFIRNPIIGGISCISVLLAAIYQLKLTNKLTGGISSIYMHRTNDVTIREKFIMNILIISTLIIGICPQIMYNLLYWTVNNYIYII |
| Subunit NU5M of NADH:Ubiquinone Oxidoreductase (Complex I) | 5 | 655 | Yarrowia Lipolytica | MYNAISLIIILPCISWLFPLFFGRQLGYVFVTRMTSTLIIITTLITYYYFYQLLGNNNPINLELFNYLNIDYLDINYNFEIDALTITMLLAITTISSMVHIYSIGYMETDPHQVRFFSLLSMFTFWMIILVTGSNYFVLFVGWEFIGVTSYLLISFWVTRLQAMKSALSAVLMNRFGDAFFVLGLCVIAYVFGTLNYSTIFATAYLINTDLLVLIMLALFIAAMAKSAQFGLHNWLTLAMEGPTPVSSLLHAATLVTAGIYLLLRSANILEYTPTVLFIILWIGALTTLSAGLIAICSNDLKRIIALSTMSQLGMMTIAIGLSAYNLALFHLLGHAFFKALLFMSAGSIIHSILNESQDIRTYGGLLSYLPYTYICITIASLSLMAMPGLTGYYTKDIIIESTYGSYSISNYVVYWIAYLSAVLTCVYSMKILYLTFYSNPNNNTITYYNAHESNIYITLPMFILAIFAMFAGWILKDIYLGVGTDFVGTHILPNNFSYFDTEFSITQFYKLLPLISAILVSILIVVLNEFFAIVFNLNNKYINTVYSIFNQKLVSDQILNHFIIFKGLVTSGNIAHHVDKGSLYRLGPVGINRLLNKASYNVINLSSNTRSSLSMNSMLILITIVSLLLLVLVMNVNFIIVIPVLISILYILFS |
| Subunit NU6M of NADH:Ubiquinone Oxidoreductase (Complex I) | 6 | 185 | Yarrowia Lipolytica | MMYLTYYFIEITIFLAILCTIFIISAKNPMVSILYMIALFVIAAMYLYLIGLGIFSLLYIMIYIGAIAVLFLFIITLLDINSTELSVKSNIRDLPLVLISLIVLTISGLMIYSNDSILINKLLEAFGNDYNTIITQDWFNIENTTLLTTIGNVLLTNNAFILLVLAIVLLLGIIGPISITMKHKE |
| Subunit NB8M of NADH:Ubiquinone Oxidoreductase (Complex I) | 8 | 99 | Yarrowia Lipolytica | MAEFPPLLSQEDMKKHKILLAYRDRCAALLVPLNECRKKNYYMPWACGHERHEYEMCEVADFQRRVKAMDKLKAEKIEQAKAAAAAAAAAAAADAEESK |
| Subunit NIPM of NADH:Ubiquinone Oxidoreductase (Complex I) | 9 | 89 | Yarrowia Lipolytica | MTAAGISLTGGRNRCFSEWQSFMHCTAKTDAKSRAQCLPNFEDYMECLHHTKEKARLREIESVLKQKKEGLEAPPVKVIPVKAIGLVEE |
Experimental Data
Method: ELECTRON MICROSCOPY