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FASTA Sequence PDB Format mmCIF Format
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6RD9

Cryoem structure of polytomella f-atp synthase, primary rotary state 1, composite map

PDB DOI: 10.2210/pdb6rd9/pdb

Classification: PROTON TRANSPORT
Organism(s): Polytomella Sp. Pringsheim 198.80

Deposited: 2019-04-12
Deposition Author(s): Klusch, N. , Kuhlbrandt, W. , Murphy, B.J. , Yildiz, O.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.0 Å

6rd9
Literature

Cryoem structure of polytomella f-atp synthase, primary rotary state 1, composite map

Klusch, N. , Kuhlbrandt, W. , Murphy, B.J. , Yildiz, O.

Primary Citation of Related Structures: 6RD9


Proteins
Molecule Chains Sequence Length Organism Sequence
ASA-10: Polytomella F-ATP synthase associated subunit 10 0 82 Polytomella Sp. Pringsheim 198.80 MSYSAYFAKAGFQFPAGLSALVAGIVALNVCTGRPTKGTKEISNAEYNATPIGYLQSPDQHPTAFPKVPGMKDVHGSPHHHH
ASA-9: Polytomella F-ATP synthase associated subunit 9 9 97 Polytomella Sp. Pringsheim 198.80 MAVTSFLGKAFEKYFYDFSAYEQFGLNRFLSSKGQYVALRHVGFVMVGVNVLLAANFPFNPPFPTIGMCPAGWEGTWVCQADKAKALEMYKEWKKSN
Mitochondrial ATP synthase subunit c A 127 Polytomella Sp. Pringsheim 198.80 MSVQRLSLGAARCLSAGVARVQASQALVAQKAVAVAPTRAQAAPAEVAQVRSMSVLAASKMVGAGCATIALAGVGAGLGVMFGSLINGAARNPNIAKQLVGYALLGFALTESIALFSLLVVFLILFA
Mitochondrial ATP synthase subunit c B 127 Polytomella Sp. Pringsheim 198.80 MSVQRLSLGAARCLSAGVARVQASQALVAQKAVAVAPTRAQAAPAEVAQVRSMSVLAASKMVGAGCATIALAGVGAGLGVMFGSLINGAARNPNIAKQLVGYALLGFALTESIALFSLLVVFLILFA
Mitochondrial ATP synthase subunit c C 127 Polytomella Sp. Pringsheim 198.80 MSVQRLSLGAARCLSAGVARVQASQALVAQKAVAVAPTRAQAAPAEVAQVRSMSVLAASKMVGAGCATIALAGVGAGLGVMFGSLINGAARNPNIAKQLVGYALLGFALTESIALFSLLVVFLILFA
Mitochondrial ATP synthase subunit c D 127 Polytomella Sp. Pringsheim 198.80 MSVQRLSLGAARCLSAGVARVQASQALVAQKAVAVAPTRAQAAPAEVAQVRSMSVLAASKMVGAGCATIALAGVGAGLGVMFGSLINGAARNPNIAKQLVGYALLGFALTESIALFSLLVVFLILFA
Mitochondrial ATP synthase subunit c E 127 Polytomella Sp. Pringsheim 198.80 MSVQRLSLGAARCLSAGVARVQASQALVAQKAVAVAPTRAQAAPAEVAQVRSMSVLAASKMVGAGCATIALAGVGAGLGVMFGSLINGAARNPNIAKQLVGYALLGFALTESIALFSLLVVFLILFA
Mitochondrial ATP synthase subunit c F 127 Polytomella Sp. Pringsheim 198.80 MSVQRLSLGAARCLSAGVARVQASQALVAQKAVAVAPTRAQAAPAEVAQVRSMSVLAASKMVGAGCATIALAGVGAGLGVMFGSLINGAARNPNIAKQLVGYALLGFALTESIALFSLLVVFLILFA
Mitochondrial ATP synthase subunit c G 127 Polytomella Sp. Pringsheim 198.80 MSVQRLSLGAARCLSAGVARVQASQALVAQKAVAVAPTRAQAAPAEVAQVRSMSVLAASKMVGAGCATIALAGVGAGLGVMFGSLINGAARNPNIAKQLVGYALLGFALTESIALFSLLVVFLILFA
Mitochondrial ATP synthase subunit c H 127 Polytomella Sp. Pringsheim 198.80 MSVQRLSLGAARCLSAGVARVQASQALVAQKAVAVAPTRAQAAPAEVAQVRSMSVLAASKMVGAGCATIALAGVGAGLGVMFGSLINGAARNPNIAKQLVGYALLGFALTESIALFSLLVVFLILFA
Mitochondrial ATP synthase subunit c I 127 Polytomella Sp. Pringsheim 198.80 MSVQRLSLGAARCLSAGVARVQASQALVAQKAVAVAPTRAQAAPAEVAQVRSMSVLAASKMVGAGCATIALAGVGAGLGVMFGSLINGAARNPNIAKQLVGYALLGFALTESIALFSLLVVFLILFA
Mitochondrial ATP synthase subunit c J 127 Polytomella Sp. Pringsheim 198.80 MSVQRLSLGAARCLSAGVARVQASQALVAQKAVAVAPTRAQAAPAEVAQVRSMSVLAASKMVGAGCATIALAGVGAGLGVMFGSLINGAARNPNIAKQLVGYALLGFALTESIALFSLLVVFLILFA
Mitochondrial ATP synthase subunit 6 M 327 Polytomella Sp. Pringsheim 198.80 MSVLSSVSMGSRIGSSLLGRSSAYLAQCGFSTRSNLNGSIDTSSSVFQALSSDNENKPAASPLNVKLPGMSCSSILLPKTSRIAVPFGNQTMAMSSVRDVKTGSLPTNFLTGVYRFWRSQNPAEKPHDPVNDRLLPAVVDASDKRASIGTWATTFFCTIISCNLLGLMPFNEAPTSGLGFATGLGVSVWATATILGLSKTGFKFPGHFIPGGTPWPMAFIFVPLETISYTFRAVSLGVRLWVNMLAGHTLLHILTGMALALPFSLGFFSMVPATFGVCCLLSALVGLEYLVAVLQSGVFSILSTVYVGEFNHDKFIGPAAKIVKKIH
Mitochondrial ATP synthase subunit OSCP P 229 Polytomella Sp. Pringsheim 198.80 MLARVASVALRRAEGKIMPQMVRALSVSAASAAQAELKLPTAPLQLSGTSAQIATLLWQVAAKENQLDKVQDELYQFIELFKQHSELRRLATDPFVPTLVRTKIISSVLKDSGASEITKKLFEALADEGALSALLEVTVNYEELMLAHKKEVYCTVITAEPLDKLERVELTKKAEKFVDAGFKLVMQEKIDKKLLGGFVIEFSDRRVDMSTAKKVEEFNNFVNKLVLSI
epsilon: Polytomella F-ATP synthase epsilon subunit Q 74 Polytomella Sp. Pringsheim 198.80 MCAPSGPFYRVAGMSYLRYSNICADLLRNVLKEPFKAKAQARQAIHFRQAPYVDGKAGASKVYELENGIPKTAN
Mitochondrial ATP synthase subunit delta R 199 Polytomella Sp. Pringsheim 198.80 MFGLKRAVTVGRRFISTSAARMEAAAPAGPKEFTEVWNKKAPSTLIVPEFPSNYTAVKAVGEGQVHGDAFPVNFYTPHSILSQAQKDTVVLPGVDGYFGVKASHVPTIAQLKPGVVELHSGAESEKFFVSGGFAFVHPNGVTDICVLEAATLDQVDPAAVKSALAAASAAQPTDEFEQAANRAAIELYSALESAVEAKA
ATP synthase gamma chain, mitochondrial S 317 Polytomella Sp. Pringsheim 198.80 MALRKAVLSLGLSQGVAAEAVLGSGMFNAVQHESVRYASNQAVKQRIRAIKNIGKITKAMKMVAASKMKNAQIAVEQSRGLVDPFVRLFGDFPAVNSNKSVVVAVTSDKGLCGGLNSNITKYTRATLATTESEGKDVVVVSIGDKGRSQLTRIESQRYQLAIADTYKVRVTFGQASLIVEELIKHNPQSYQILFNKFRSAISFKPTVATILSPDLLEKQLEDVTGNSLDAYDIEASHERSDVLRDLTEFHLGVTLYNAMLENNCSEHASRMSAMENSTKSAGEMLGKLTLDYNRKRQATITTELIEIIAGASALMDE
ATP synthase subunit alpha T 562 Polytomella Sp. Pringsheim 198.80 MRSPAAFVARSGLFKASLGQSNWAQKAEQMMASVTRTFAADAKALDELRKPKFSSKYLIQHVSQKLIPAVKEWEKSYQPPVIHLGRVLSVGDGIARVYGLKSVQAGELVCFDSGVKGMALNLQADHVGVVVFGNDSVIHQGDLVYRTGQIVNVPIGPGTLGRVTDGLGQPIDGKGPLTNVRSSLVEVKAPGIIARQSVREPLFTGVKAVDALVPIGRGQRELIIGDRQTGKTAVAIDAIIHQKNCNEQVPKAQRVYCVYVAVGQKRSTVAQLVKLFTQTGAMRYTIMVSATASDAAPLQFLAPYSGCAMAEYFRDTGKHGLIIYDDLSKQSVAYRQMSLLLRRPPGREAFPGDVFYLHSRLLERAAKLSKELGGGSLTAFPVIETQAGDVSAYIATNVISITDGQIFLETELFYKGIRPALNVGLSVSRVGSAAQFPGMKQVAGTLKLELAQYREVAAFAQFGSDLDAATQYVLERGARLTEMLKQKQFAPIPIERQTVAVYAATKGFLDKVRVQDIVAAEEAVISQVNPAVFKILKANGKITPALDAHLKAELRKVKLPGA
ATP synthase subunit alpha U 562 Polytomella Sp. Pringsheim 198.80 MRSPAAFVARSGLFKASLGQSNWAQKAEQMMASVTRTFAADAKALDELRKPKFSSKYLIQHVSQKLIPAVKEWEKSYQPPVIHLGRVLSVGDGIARVYGLKSVQAGELVCFDSGVKGMALNLQADHVGVVVFGNDSVIHQGDLVYRTGQIVNVPIGPGTLGRVTDGLGQPIDGKGPLTNVRSSLVEVKAPGIIARQSVREPLFTGVKAVDALVPIGRGQRELIIGDRQTGKTAVAIDAIIHQKNCNEQVPKAQRVYCVYVAVGQKRSTVAQLVKLFTQTGAMRYTIMVSATASDAAPLQFLAPYSGCAMAEYFRDTGKHGLIIYDDLSKQSVAYRQMSLLLRRPPGREAFPGDVFYLHSRLLERAAKLSKELGGGSLTAFPVIETQAGDVSAYIATNVISITDGQIFLETELFYKGIRPALNVGLSVSRVGSAAQFPGMKQVAGTLKLELAQYREVAAFAQFGSDLDAATQYVLERGARLTEMLKQKQFAPIPIERQTVAVYAATKGFLDKVRVQDIVAAEEAVISQVNPAVFKILKANGKITPALDAHLKAELRKVKLPGA
ATP synthase subunit alpha V 562 Polytomella Sp. Pringsheim 198.80 MRSPAAFVARSGLFKASLGQSNWAQKAEQMMASVTRTFAADAKALDELRKPKFSSKYLIQHVSQKLIPAVKEWEKSYQPPVIHLGRVLSVGDGIARVYGLKSVQAGELVCFDSGVKGMALNLQADHVGVVVFGNDSVIHQGDLVYRTGQIVNVPIGPGTLGRVTDGLGQPIDGKGPLTNVRSSLVEVKAPGIIARQSVREPLFTGVKAVDALVPIGRGQRELIIGDRQTGKTAVAIDAIIHQKNCNEQVPKAQRVYCVYVAVGQKRSTVAQLVKLFTQTGAMRYTIMVSATASDAAPLQFLAPYSGCAMAEYFRDTGKHGLIIYDDLSKQSVAYRQMSLLLRRPPGREAFPGDVFYLHSRLLERAAKLSKELGGGSLTAFPVIETQAGDVSAYIATNVISITDGQIFLETELFYKGIRPALNVGLSVSRVGSAAQFPGMKQVAGTLKLELAQYREVAAFAQFGSDLDAATQYVLERGARLTEMLKQKQFAPIPIERQTVAVYAATKGFLDKVRVQDIVAAEEAVISQVNPAVFKILKANGKITPALDAHLKAELRKVKLPGA
ATP synthase subunit beta X 574 Polytomella Sp. Pringsheim 198.80 MALRYAAGLAKNVVQRQGASLNIARAFAAEPAPAIDAGYVSQVIGPVVDVRFDGELPSILSSLEVEGHSVRLVLEVAQHMGDNTVRCIAMDSTDGLVRGQKVVDTGSPIKVPVGRGTLGRIMNVIGEPVDEQGPIDAADIWSIHREAPEFTEQSTEQEILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGAERGNSKCTLVYGQMNEPPGARARVALTGLTVAEYFRDIEGQDVLLFVDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTTKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSIAELGIYPAVDPLDSTSRMLNPNVIGAEHYNVARGVQKVLQDYKNLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGTPGKYVDLADTISGFQGVLTGKYDDLPEMAFYMVGDIKEVKEKADKMAKDIASRKEADNKKVSEELKDIPSLDKLVSEIKEVVIEEDDGLEEDFKAEALSSETVVLNEEGKSVPLPKKN
ATP synthase subunit beta Y 574 Polytomella Sp. Pringsheim 198.80 MALRYAAGLAKNVVQRQGASLNIARAFAAEPAPAIDAGYVSQVIGPVVDVRFDGELPSILSSLEVEGHSVRLVLEVAQHMGDNTVRCIAMDSTDGLVRGQKVVDTGSPIKVPVGRGTLGRIMNVIGEPVDEQGPIDAADIWSIHREAPEFTEQSTEQEILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGAERGNSKCTLVYGQMNEPPGARARVALTGLTVAEYFRDIEGQDVLLFVDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTTKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSIAELGIYPAVDPLDSTSRMLNPNVIGAEHYNVARGVQKVLQDYKNLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGTPGKYVDLADTISGFQGVLTGKYDDLPEMAFYMVGDIKEVKEKADKMAKDIASRKEADNKKVSEELKDIPSLDKLVSEIKEVVIEEDDGLEEDFKAEALSSETVVLNEEGKSVPLPKKN
ATP synthase subunit beta Z 574 Polytomella Sp. Pringsheim 198.80 MALRYAAGLAKNVVQRQGASLNIARAFAAEPAPAIDAGYVSQVIGPVVDVRFDGELPSILSSLEVEGHSVRLVLEVAQHMGDNTVRCIAMDSTDGLVRGQKVVDTGSPIKVPVGRGTLGRIMNVIGEPVDEQGPIDAADIWSIHREAPEFTEQSTEQEILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGAERGNSKCTLVYGQMNEPPGARARVALTGLTVAEYFRDIEGQDVLLFVDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTTKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSIAELGIYPAVDPLDSTSRMLNPNVIGAEHYNVARGVQKVLQDYKNLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGTPGKYVDLADTISGFQGVLTGKYDDLPEMAFYMVGDIKEVKEKADKMAKDIASRKEADNKKVSEELKDIPSLDKLVSEIKEVVIEEDDGLEEDFKAEALSSETVVLNEEGKSVPLPKKN
ATP synthase associated protein ASA1 1 618 Polytomella Sp. Pringsheim 198.80 MMRAAQKAKQELPATVLTQTRSYLAPLRSDFTEEITAPKVASASNLVNEWNNKKQATENLMKLLQAYKDIGDAKSEPLLKNHNPRTFEDRDYPVPDFRTQNLKAGDVPKFFDTVISTRASAAIASKDKFWAGRKTEAEAASAKASAAFPRVAVPEWKKGKTVSIENLNTVTDKYAAALVPKRKLALPVLPEGVKKAVEDFAASVGQAKNASEVSELLAKSLAEKAVVTEGGKVVEGFSYVSKAVAAKVIATRRAEVHERLLKLWAKRLLVSPELAIVPLNEFDAQLASKFEGISPKYQELLSAVAQGNKTFAQRLNSSPAFSSFLLKREKAESEVPPSELELEAAQKAAELEDPEVALRTLLGPQMEALGASDLLLSEQIRVITEHRYTPDRLQYKEGMKLADKIAAQEAALKEELKVIYGDNVDVKHFQASPRTPVQQLFDSLKNAAANKERAAKEAAAAASPYLAYAVTKKQEVQADPSNIPFDEVLYPQLSEELLELELSDIREDEIALEKAEEEELWLLTLTQQFKHIQKHFGIDLPHSVVAHMDPLLIKKIDWETTNALEDFDITLDDMGAEDAKEQWGAENLSHHFLPLIRYRRDLARKNGDRYGPDLVNGN
ASA-2: Polytomella F-ATP synthase associated subunit 2 2 441 Polytomella Sp. Pringsheim 198.80 ENDVPAILKEIDSLVSREAVSAKEVSDAAVALTYLQVKANRRLWGKVLEKAGAAQDYDAASLTNLLWAINTGGVEHFKTVAELAGPAVSLLPSLSPVQLSIVVEALGGAGVKNYELYNKASAVVVSKIGEFKPAEIARVLYGVAFGGVNDVALAKAAGKVFASTEVDSRTAAQALYALAKLGRADKATVDALLKSFKKGTESASDAAAASFALGSLSFKAEKAIVDALKASAGDLAPAQAVEAAYGLALSGATDAEAFKALFGVVAPAIEKAPDALEVSSLAQLHVASTISGAKLPAAVGSFVAKAFGLAADAARLKRSSAESALVADVAAATAVAFGAQYRPEVASAVASYVKTAPDGSVLDIAITKGDAKVLVQAVPSSLLTSTTPAKPLGHVAAYSKVREAQGYAVAVVPANEFEALPDQKAKAQYVLAAIKKVAPSF
Mitochondrial F1F0 ATP synthase associated 32 kDa protein 3 325 Polytomella Sp. Pringsheim 198.80 MRQASRLALSIRQAGNVEAASAVPAMTRQFSAPGSHEHHETPLSKVMPTVVSIPRKVACLALGATKKVVCGLASSGPSQNLVSTFANKVIVEENLVNVAEIDVPFWSYWLSSAGFTSKDAFVKFAEAVKPKVAALSTSDITNLTVAFKRANYYDKDLFTGIEANVSANFTKFETEQLLQIVATFDAFNHSSVAFLDDVADSITYCNHYLAPVRAGADELATLLTYYAKNGHERADLLATVARGFSEVSLGKLSAAQRKDTVLSALKAFQTFGFYPESIEAVIGAALVSPAEYSAEELKEVEAVKVAAENALGGEFVLIQEGAHGH
Mitochondrial ATP synthase associated protein ASA4 4 294 Polytomella Sp. Pringsheim 198.80 ATEPAVSKKEVLYFLSSKDAESSTAVKSYLKSLYAGAQVEATETDASELIAQLEKKYLSAQVVEPGVHNIALPLGESGSAPVKRYAAELFNLGAQAGFECPFIEVSKKFGQETATSETVKDVLNKTKSYVSADYNAALNEVLSSVEAEINGPVLFDGKTEGFKKFAAKAKAVAVSRGLPADTILAYCAGSANEDAADKVSKEFFTWFESAYTADAAAEVKAIEAEAASILDRHLAKPVAQIRKEQASAYASLLKRAETAKGAKWAEKYLEDVKAVQWFDASVAEAPASGPKVAA
Mitochondrial F1F0 ATP synthase associated 14 kDa protein 5 123 Polytomella Sp. Pringsheim 198.80 MKLLPESLQQEAATAAVVASWVLWHLDTQLLPTIMREHKLHACWAAAAKRYNEKLFKLNPSYDRVLSLPAVSKNQVLENVFHTAPKAPVEHLEKMVSANSKVYDALNLQSKRVLIWQVKPALF
Mitochondrial ATP synthase subunit ASA6 6 151 Polytomella Sp. Pringsheim 198.80 MMLRTLTRSSAVAGQAVRLFKTSAAAAEGNSVAGIIKSVNETSGANLLSSLKTIKAQAAPIYPAAASSTGYSTQAKIALFGALSWILYRADGQSKAHEWIVDLNLNVLQAAWLISFSSLIPFRAVYFAFRGMAPATASTLNGLKTFSSISL
Mitochondrial ATP synthase associated protein ASA7 7 190 Polytomella Sp. Pringsheim 198.80 MSSVRAGVEAGRRDLTTFTFSGLQDAPVAALSGSIKLNVAAKAGKAEVTVAAGAAKAATQVSAAALRKLSGSKISLAEVARISVLHSSIQNYLLSLSNERYQLLSQWPDFTTMYGKDFYYRAHPEDLKKFYDAADEYYKLYETVTEFDSLSALASQVVPNYAARRRSTVHPAIGSTVADGAFTNFLLSKQ
Mitochondrial ATP synthase subunit ASA8 8 89 Polytomella Sp. Pringsheim 198.80 MVLGEVYLKDILRTPPTGAIPANVPHPFQTSFYTYATKKLIPRHWYLLGGFTFTITLYGILDGLRDSGKKKAYDEAIHAGKTPYTAGGH
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2019-04-12
Deposition Author(s): Klusch, N. , Kuhlbrandt, W. , Murphy, B.J. , Yildiz, O.