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FASTA Sequence PDB Format mmCIF Format
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6RAO

Cryo-em structure of the anti-feeding prophage (afp) baseplate, 6-fold symmetrised

PDB DOI: 10.2210/pdb6rao/pdb

Classification: VIRUS LIKE PARTICLE
Organism(s): Serratia Entomophila

Deposited: 2019-04-06
Deposition Author(s): Desfosses, A.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.1 Å

6rao
Literature

Cryo-em structure of the anti-feeding prophage (afp) baseplate, 6-fold symmetrised

Desfosses, A.

Primary Citation of Related Structures: 6RAO


Proteins
Molecule Chains Sequence Length Organism Sequence
Afp1 A 149 Serratia Entomophila MAITADDIAVQYPIPTYRFIVTLGDEQVPFTSASGLDINFDTIEYRDGTGNWFKMPGQRQAPNITLSKGVFPGKNAMYEWINAIQLNQVEKKDIMISLTNEAGTEVLVSWNVSNAFPTSLTSPSFDATSNEIAVQQITLMADRVTIQTA
Afp1 B 149 Serratia Entomophila MAITADDIAVQYPIPTYRFIVTLGDEQVPFTSASGLDINFDTIEYRDGTGNWFKMPGQRQAPNITLSKGVFPGKNAMYEWINAIQLNQVEKKDIMISLTNEAGTEVLVSWNVSNAFPTSLTSPSFDATSNEIAVQQITLMADRVTIQTA
Afp2 C 354 Serratia Entomophila MTVTTTYPGVYLSEDAVSSFSVNSAATAVPLFAYDSENTNTINKPIQVFRNWAEFTVEYPTPLEDAFYTSLSLWFMHGGGKCYLVNEANIADAVAQYDDITLIVAAGTDTTTYTAFTTVVGQGYRIFGLFDGPKEKIAGTAKPDEVMEEYPTSPFGAVFYPWGTLASGAAVPPSAIAAASITQTDRTRGVWKAPANQAVNGVTPAFAVSDDFQGKYNQGKALNMIRTFSGQGTVVWGARTLEDSDNWRYIPVRRLFNAVERDIQKSLNKLVFEPNSQPTWQRVKAAVDSYLHSLWQQGALAGNTPADAWFVQVGKDLTMTQEEINQGKMIIKIGLAAVRPAEFIILQFSQDIAQ
Afp3 D 451 Serratia Entomophila MATVTSVPGVYIEEDASPAMSVSASATAVPLFVARFTPLKPELAGVITRIGSWLDYTILFDSNVPSSARVTVSSTAVEPSPEFDALETASSKATTTYTYQIDDTEVVDPTASVALRLYFQNGGGPCYLYPLEKADDNGPLAALPDLIDEVGEITLLASPDPDETYRTAVYGALAASLDQHKGYFLLADSVNGDAPSAVGGSAQVAVYYPNVEVPHTRKLDDAEVAIDGYLDDEGKAVTTLAALRVVNTEFAGEIAQSLSGDLSAPLSLPPSALIAGVYGKTDGERGVWKAPANVVLNGVSDVSVRVTNEQQAELNPKGINVIRHFSDRGLVVWGSRTQKDDDDWRYIPVRRLFDAAERDIKKALQPMVFEPNSQLTWKRVQTAIDNYLYRLWQQGALAGNKAEEAYFVRVGKGITMTQDEINQGKMIIQVGMAAVRPAEFIILKFTQDMSQ
Afp5 F 149 Serratia Entomophila MSTPAVSHRFLVNFLFNNIPNPFDIAFQRISGLSRTLEVSQHREGGENVRNLWLAEQVNHGSLVLERGVMNASPLTLQFDRVLRRESTQWANVVIMLLNELSLPVTTWTLSHALPVRWQMGDLDAGSNQVLINTLELRYQDMRMLGVKL
Afp9 H 140 Serratia Entomophila MSNDILKATLGQCWAFPPRFSPDTGVSLTAGVEAVMQSLRVLFMTEPGERIMRESYGGGMHDFIFENITDELLANIHNRIEESILRHEPRALLKDVIIQPDKQEASRLRAQITVYLAGSDLVETVDGTLNIHDGQTLRLL
Afp4 E 417 Serratia Entomophila MTMVLPGVSYNETLLTQASNDDPVTMPLFIGYTPPDTAIPVTVMQPVSVGSLTQANSLFGQRGTLAYSLRHFFENGGLQCYVLPLGPGKGEPAARLQELIAALQTPQMLETLLADDKTGLVLVPELSELNEVSSTSLSAEGVDAAEVDADALWYQGWQVLLTLCRQAPQRFALLELPEDPASAVTLTQQSFSADQCQRGAAWWPRLETSYQDESSAPVVLSPLPAVAAAIQRSAHDNGVWKAPANIALAKTRRPTQSILTSQALLDNQGVSCNLIRSFVGKGVRLWGCRTLLNEENTAWRYIQIRLLVSSVEHYLSKLARAYLFEPNTAPTWMKLKGQVWTWLRQQWLAGAFFGTVEDEAFSLSIGLDETMTEDDIRHGKMILQVRLALLAPAEFIAISLTLDLRDGTASAQTGGQS
Afp7 G 229 Serratia Entomophila MSLLERGLSKLTLNAWKDREGKIPAGSMSAMYNPETIQLDYQTRFDTEDTINTASQSNRYVISEPVGLNLTLLFDSQMPGNTTPIETQLAMLKSLCAVDAATGSPYFLRITWGKMRWENKGWFAGRARDLSVTYTLFDRDATPLRATVQLSLVADESFVIQQSLKTQSAPDRALVSVPDLASLPLLALSAGGVLASSVDYLSLAWDNDLDNLDDFQTGDFLRATKGEEV
Afp11 I 607 Serratia Entomophila MSDLEQLKQILGNGLTDQTFLLEPRTGKGLLNLMAKYTEAVPFAGHTDADWKDFWMAGCTLEALSDIYQYPGLAEKKLPVQQAFLLALLHLLETPRAMLNTVPARHRSLYYRDLLGFAPRAPQPDSVAVSFTLQRNSSPYALPAGSLLDGGQDSAGNSITYQTDDSLLITGQQLEQLCWTAQVGETWKRYTAIDSATGVTLPAEGLRLFTATGQGTDTKEKAPELYLGFSGTSAQDTLSLYWSVRASSALDVTWWYYQGTKWASLDAELQDNTASLSVSNLWRARLPADSQPGSGLPQDDEPLEAGYYWIKGTLKENKEAKDENSPAEAMPQLQAVLANAMTATLNVAQAIDDSHFSQPLPANTINQLVTPVAAISDVRQPLPSVGGQPRETEMAMLQRAAPRIAHRQRAITWNNMRSLLMEHYPEIFDVRFPDVDKLSRLPALEVQSLMVIPDGRYGDNDDALRPALSNGRLSRMAQWLSQYTSLWAAPTLKNPKYIDVTARYRVTFVVGIRPDYGYRQLAAQLQHDYMPWATDRRQAVTPGNQVDYYQLLATLQQSPLVQSVNALVLSHDVIDETGKPTSMETQSTVTARDDEVLILCPEGETHV
Afp12 J 963 Serratia Entomophila MSKENALFPAVKDAIVFDALWQQAHEKVTALSGEIWTDTGDHDPGVTLLQSATWNCSDLSYRASLSLNDLLTHQDQSTLFPEEFGPEQVLTCNTVTAEDYRRALLDVHSSDIQALDTPEQDFLFSDVSLTQEPKEHRFHWWYNAEKREYSFRKPTDSGEVNELKLRGNLWLSLVPTRYTQSLSPENLAAVEQCLAEFLAAHRNLGEVVSRITWLQPATFSPRMTIELADNIGDINQVAAQIYQVTDAFLRPAVARYTTEQRRALGDADDAIFEGPRLKHGWQQTAPSQITSGGYVLNLGPLVNLLLAIPGVASLSTLSVDKGDGHITAVTGDNLRWQVADGYYPLLWGAPPLSLLAGDDSPLTLVSKGGIRNTLESEAMAGYLTQADLIVTTPTVLPAGRFRDQTLYIPIGQRQPECYALQQPDTVIDDQTRAVHQFLLPVDQLLADGTAELAQLPTLLAFKNRGDAIRGTRWPYTNAMVQQAIHQPYAKTLEAIAQQDAAIFTQDKQPVGGNYARELDFLQYLLGYFGTQRAALPLTLDLPDFLATQRAYLAQQPALGYDRINIRIDQVSALQKRIAARIGLDSICFADNPDLGQLPFYLIEHRQLLPQTPDSTFDSEQTPSGFAVAEPDITLTQAGSVGKVVQGQLIDLIAIEGGSRLHVSRLLVIKAEGDSFTVSTENSQQLHNTLSRLETAWASHNLRWQNSNVWLQDMDYRLNYAEAKLQPANPQQRLLASNAQSPYPAMVSVGDGIVLRPAGLQFYMPGANATRAATLDADWQLAATVKAVDPIAGTLLIEKAAGSTEDFPSAESSFRYQWAFSQANYATTDRFSFVVSAVLNRRLIENPNIVPEQLVAWIQETIMAEFPAHVSLINHWLDDATFNNFGVTYSRWQNSGMPLGDDAFALMQILTLGHLPVTQLDIGLMRIATEEQRTEVIGDGSQWHEDVILREELFYVPKDVQTTL
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2019-04-06
Deposition Author(s): Desfosses, A.