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FASTA Sequence PDB Format mmCIF Format
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6P5A

Drosophila p element transposase strand transfer complex

PDB DOI: 10.2210/pdb6p5a/pdb

Classification: TRANSFERASE/DNA
Organism(s): Drosophila Melanogaster , Synthetic Construct

Deposited: 2019-05-30
Deposition Author(s): Ghanim, G. , Kellogg, E.H. , Nogales, E. , Rio, D.C.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.6 Å

6p5a
Literature

Drosophila p element transposase strand transfer complex

Ghanim, G. , Kellogg, E.H. , Nogales, E. , Rio, D.C.

Primary Citation of Related Structures: 6P5A


Proteins
Molecule Chains Sequence Length Organism Sequence
Transposable element P transposase A 569 Drosophila Melanogaster , Synthetic Construct MKYCKFCCKAVTGVKLIHVPKCAIKRKLWEQSLGCSLGENSQICDTHFNDSQWKAAPAKGQTFKRRRLNADAVPSKVIEPEPEKIKEGYTSGSTQTESCSLFNENKSLREKIRTLEYEMRRLEQQLRESQQLEESLRKIFTDTQIRILKNGGQRATFNSDDISTAICLHTAGPRAYNHLYKKGFPLPSRTTLYRWLSDVDIKRGCLDVVIDLMDSDGVDDADKLCVLAFDEMKVAAAFEYDSSADIVYEPSDYVQLAIVRGLKKSWKQPVFFDFNTRMDPDTLNNILRKLHRKGYLVVAIVSDLGTGNQKLWTELGISESKTWFSHPADDHLKIFVFSDTPHLIKLVRNHYVDSGLTINGKKLTKKTIQEALHLCNKSDLSILFKINENHINVRSLAKQKVKLATQLFSNTTASSIRRCYSLGYDIENATETADFFKLMNDWFDIFNSKLSTSNCIECSQPYGKQLDIQNDILNRMSEIMRTGILDKPKRLPFQKGIIVNNASLDGLYKYLQENFSMQYILTSRLNQDIVEHFFGSMRSRGGQFDHPTPLQFKYRLRKYIIARNTEMLR
Transposable element P transposase G 569 Drosophila Melanogaster , Synthetic Construct MKYCKFCCKAVTGVKLIHVPKCAIKRKLWEQSLGCSLGENSQICDTHFNDSQWKAAPAKGQTFKRRRLNADAVPSKVIEPEPEKIKEGYTSGSTQTESCSLFNENKSLREKIRTLEYEMRRLEQQLRESQQLEESLRKIFTDTQIRILKNGGQRATFNSDDISTAICLHTAGPRAYNHLYKKGFPLPSRTTLYRWLSDVDIKRGCLDVVIDLMDSDGVDDADKLCVLAFDEMKVAAAFEYDSSADIVYEPSDYVQLAIVRGLKKSWKQPVFFDFNTRMDPDTLNNILRKLHRKGYLVVAIVSDLGTGNQKLWTELGISESKTWFSHPADDHLKIFVFSDTPHLIKLVRNHYVDSGLTINGKKLTKKTIQEALHLCNKSDLSILFKINENHINVRSLAKQKVKLATQLFSNTTASSIRRCYSLGYDIENATETADFFKLMNDWFDIFNSKLSTSNCIECSQPYGKQLDIQNDILNRMSEIMRTGILDKPKRLPFQKGIIVNNASLDGLYKYLQENFSMQYILTSRLNQDIVEHFFGSMRSRGGQFDHPTPLQFKYRLRKYIIARNTEMLR
Transposable element P transposase B 135 Drosophila Melanogaster , Synthetic Construct TEMDELTEDAMEYIAGYVIKKLRISDKVKENLTFTYVDEVSHGGLIKPSEKFQEKLKELECIFLHYTNNNNFEITNNVKEKLILAARNVDVDKQVKSFYFKIRIYFRIKYFNKKIEIKNQKQKLIGNSKLLKIKL
Transposable element P transposase H 135 Drosophila Melanogaster , Synthetic Construct TEMDELTEDAMEYIAGYVIKKLRISDKVKENLTFTYVDEVSHGGLIKPSEKFQEKLKELECIFLHYTNNNNFEITNNVKEKLILAARNVDVDKQVKSFYFKIRIYFRIKYFNKKIEIKNQKQKLIGNSKLLKIKL

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*CP*GP*AP*AP*CP*TP*AP*TP*A)-3') c 16 NA CCGCTCACGAACTATA
DNA (5'-D(P*CP*GP*AP*AP*CP*TP*AP*TP*A)-3') i 16 NA CCGCTCACGAACTATA
DNA (5'-D(P*AP*GP*GP*TP*GP*GP*TP*CP*CP*CP*GP*TP*CP*GP*G)-3') d 38 NA AGGTGGTCCCGTCGGCAAGAGACATCCACTTAACGTAT
DNA (5'-D(P*AP*GP*GP*TP*GP*GP*TP*CP*CP*CP*GP*TP*CP*GP*G)-3') j 38 NA AGGTGGTCCCGTCGGCAAGAGACATCCACTTAACGTAT
DNA (44-MER) e 79 NA ATACGTTAAGTGGATGTCTCTTGCCGACGGGACCACCTTATGTTATTTCATCATGGTCCGGACTATAGTTCGTGAGCGG
DNA (44-MER) k 79 NA ATACGTTAAGTGGATGTCTCTTGCCGACGGGACCACCTTATGTTATTTCATCATGGTCCGGACTATAGTTCGTGAGCGG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2019-05-30
Deposition Author(s): Ghanim, G. , Kellogg, E.H. , Nogales, E. , Rio, D.C.