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FASTA Sequence PDB Format mmCIF Format
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6OZH

Crystal structure of ciona intestinalis (ci) endonuclease v in complex with a 24mer dna containing an inosine followed by a ribo-adenosine

PDB DOI: 10.2210/pdb6ozh/pdb

Classification: HYDROLASE
Organism(s): Ciona Intestinalis , Synthetic Construct

Deposited: 2019-05-15
Deposition Author(s): Samara, N.L. , Yang, W.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.026 Å

6ozh
Literature

Crystal structure of ciona intestinalis (ci) endonuclease v in complex with a 24mer dna containing an inosine followed by a ribo-adenosine

Samara, N.L. , Yang, W.

Primary Citation of Related Structures: 6OZH


Proteins
Molecule Chains Sequence Length Organism Sequence
endonuclease V isoform X2 A 245 Ciona Intestinalis , Synthetic Construct MDNKITDEQIAEWNSKQEELRDKIIRSDGDFSLSKVKYVGGFDVSYSKINHELAVSCMVVLSYPEMKQVYMNTTKVKLSCPYKSSYLAFREIEPFQQELQLLKAKKPNLEPQVFLLDGNGFFHIRRCGAASHLGVLSNTRTIGVAKSLIEIPEDGVKKTEVISQFKRLRKTGGNELDIISTEKNEVLAKAVLYAPKVEKPIFVSAGHKCSLETAAKIVKGCTKTRIPEPIKMADKWSRKELKKIE
endonuclease V isoform X2 B 245 Ciona Intestinalis , Synthetic Construct MDNKITDEQIAEWNSKQEELRDKIIRSDGDFSLSKVKYVGGFDVSYSKINHELAVSCMVVLSYPEMKQVYMNTTKVKLSCPYKSSYLAFREIEPFQQELQLLKAKKPNLEPQVFLLDGNGFFHIRRCGAASHLGVLSNTRTIGVAKSLIEIPEDGVKKTEVISQFKRLRKTGGNELDIISTEKNEVLAKAVLYAPKVEKPIFVSAGHKCSLETAAKIVKGCTKTRIPEPIKMADKWSRKELKKIE
endonuclease V isoform X2 C 245 Ciona Intestinalis , Synthetic Construct MDNKITDEQIAEWNSKQEELRDKIIRSDGDFSLSKVKYVGGFDVSYSKINHELAVSCMVVLSYPEMKQVYMNTTKVKLSCPYKSSYLAFREIEPFQQELQLLKAKKPNLEPQVFLLDGNGFFHIRRCGAASHLGVLSNTRTIGVAKSLIEIPEDGVKKTEVISQFKRLRKTGGNELDIISTEKNEVLAKAVLYAPKVEKPIFVSAGHKCSLETAAKIVKGCTKTRIPEPIKMADKWSRKELKKIE
endonuclease V isoform X2 D 245 Ciona Intestinalis , Synthetic Construct MDNKITDEQIAEWNSKQEELRDKIIRSDGDFSLSKVKYVGGFDVSYSKINHELAVSCMVVLSYPEMKQVYMNTTKVKLSCPYKSSYLAFREIEPFQQELQLLKAKKPNLEPQVFLLDGNGFFHIRRCGAASHLGVLSNTRTIGVAKSLIEIPEDGVKKTEVISQFKRLRKTGGNELDIISTEKNEVLAKAVLYAPKVEKPIFVSAGHKCSLETAAKIVKGCTKTRIPEPIKMADKWSRKELKKIE

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA/RNA (5'-D(P*CP*GP*GP*TP*AP*AP*CP*CP*GP*I)-R(P*A)-D(P*TP*AP*TP*GP*CP*AP*GP*CP*AP*TP*TP*TP*C)-3') e 24 NA CGGTAACCGIATATGCAGCATTTC
DNA/RNA (5'-D(P*CP*GP*GP*TP*AP*AP*CP*CP*GP*I)-R(P*A)-D(P*TP*AP*TP*GP*CP*AP*GP*CP*AP*TP*TP*TP*C)-3') f 24 NA CGGTAACCGIATATGCAGCATTTC
DNA/RNA (5'-D(P*CP*GP*GP*TP*AP*AP*CP*CP*GP*I)-R(P*A)-D(P*TP*AP*TP*GP*CP*AP*GP*CP*AP*TP*TP*TP*C)-3') g 24 NA CGGTAACCGIATATGCAGCATTTC
DNA/RNA (5'-D(P*CP*GP*GP*TP*AP*AP*CP*CP*GP*I)-R(P*A)-D(P*TP*AP*TP*GP*CP*AP*GP*CP*AP*TP*TP*TP*C)-3') h 24 NA CGGTAACCGIATATGCAGCATTTC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2019-05-15
Deposition Author(s): Samara, N.L. , Yang, W.