PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6NY3

Casx ternary complex with 30bp target dna

PDB DOI: 10.2210/pdb6ny3/pdb

Classification: RNA BINDING PROTEIN/RNA/DNA
Organism(s): Deltaproteobacteria Bacterium , Synthetic Construct

Deposited: 2019-02-10
Deposition Author(s): Doudna, J.A. , Liu, J.J. , Nogales, E. , Orlova, N.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.7 Å

6ny3
Literature

Casx ternary complex with 30bp target dna

Doudna, J.A. , Liu, J.J. , Nogales, E. , Orlova, N.

Primary Citation of Related Structures: 6NY3


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA target strand c 30 NA TTTGATTTTCTGCTGCAGGATGAAATCCCG
DNA Non-target strand d 30 NA CGGGATTTCATCCTGCAGCATCCCCGACCC
gRNA b 122 NA GGCGCGUUUAUUCCAUUACUUUGGAGCCAGUCCCAGCGACUAUGUCGUAUGGACGAAGCGCUUAUUUAUCGGAGAGAAACCGAUAAGUAAAACGCAUCAAAGUCCUGCAGCAGAAAAUCAAA

Proteins
Molecule Chains Sequence Length Organism Sequence
CasX Y 986 Deltaproteobacteria Bacterium , Synthetic Construct MEKRINKIRKKLSADNATKPVSRSGPMKTLLVRVMTDDLKKRLEKRRKKPEVMPQVISNNAANNLRMLLDDYTKMKEAILQVYWQEFKDDHVGLMCKFAQPASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKFGQRALDFYSIHVTKESTHPVKPLAQIAGNRYASGPVGKALSDACMGTIASFLSKYQDIIIEHQKVVKGNQKRLESLRELAGKENLEYPSVTLPPQPHTKEGVDAYNEVIARVRMWVNLNLWQKLKLSRDDAKPLLRLKGFPSFPVVERRENEVDWWNTINEVKKLIDAKRDMGRVFWSGVTAEKRNTILEGYNYLPNENDHKKREGSLENPKKPAKRQFGDLLLYLEKKYAGDWGKVFDEAWERIDKKIAGLTSHIEREEARNAEDAQSKAVLTDWLRAKASFVLERLKEMDEKEFYACEIQLQKWYGDLRGNPFAVEAENRVVDISGFSIGSDGHSIQYRNLLAWKYLENGKREFYLLMNYGKKGRIRFTDGTDIKKSGKWQGLLYGGGKAKVIDLTFDPDDEQLIILPLAFGTRQGREFIWNDLLSLETGLIKLANGRVIEKTIYNKKIGRDEPALFVALTFERREVVDPSNIKPVNLIGVARGENIPAVIALTDPEGCPLPEFKDSSGGPTDILRIGEGYKEKQRAIQAAKEVEQRRAGGYSRKFASKSRNLADDMVRNSARDLFYHAVTHDAVLVFANLSRGFGRQGKRTFMTERQYTKMEDWLTAKLAYEGLTSKTYLSKTLAQYTSKTCSNCGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFSHRPVQEQFVCLDCGHEVHAAEQAALNIARSWLFLNSNSTEFKSYKSGKQPFVGAWQAFYKRRLKEVWKPNA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2019-02-10
Deposition Author(s): Doudna, J.A. , Liu, J.J. , Nogales, E. , Orlova, N.