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6NUA

Dna-protein crosslink between e. coli yedk and ssdna containing an abasic site

PDB DOI: 10.2210/pdb6nua/pdb

Classification: dna binding protein/dna
Organism(s): Escherichia Coli , Synthetic Construct

Deposited: 2019-01-31
Deposition Author(s): Amidon, K.M. , Eichman, B.F.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.64 Å

6nua
Literature

Dna-protein crosslink between e. coli yedk and ssdna containing an abasic site

Amidon, K.M. , Eichman, B.F.

Primary Citation of Related Structures: 6NUA


Proteins
Molecule Chains Sequence Length Organism Sequence
SOS response-associated peptidase YedK A 227 Escherichia Coli , Synthetic Construct CGRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPGWWDKPPLINARVETAATSRMFKPLWQHGRAICFADGWFEWKKEGDKKQPFFIYRADGQPIFMAAIGSTPFERGDEAEGFLIVTAAADQGLVDIHDRRPLVLSPEAAREWMRQEISGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQPVLEVLFQ
SOS response-associated peptidase YedK B 227 Escherichia Coli , Synthetic Construct CGRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPGWWDKPPLINARVETAATSRMFKPLWQHGRAICFADGWFEWKKEGDKKQPFFIYRADGQPIFMAAIGSTPFERGDEAEGFLIVTAAADQGLVDIHDRRPLVLSPEAAREWMRQEISGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQPVLEVLFQ

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*GP*TP*CP*(PED)P*GP*GP*A)-3') c 7 NA GTCXGGA
DNA (5'-D(*GP*TP*CP*(PED)P*GP*GP*A)-3') d 7 NA GTCXGGA
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2019-01-31
Deposition Author(s): Amidon, K.M. , Eichman, B.F.