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FASTA Sequence PDB Format mmCIF Format
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6NF5

Bg505 md64 n332-gt5 sosip trimer in complex with bg18-like precursor hmp1 fragmentantigen binding and base-binding rm20a3 fragment antigen binding

PDB DOI: 10.2210/pdb6nf5/pdb

Classification: VIRAL PROTEIN/immune system
Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta

Deposited: 2018-12-18
Deposition Author(s): Ozorowski, G. , Schief, W.R. , Steichen, J.M. , Torres, J.L. , Ward, A.B.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.71 Å

6nf5
Literature

Bg505 md64 n332-gt5 sosip trimer in complex with bg18-like precursor hmp1 fragmentantigen binding and base-binding rm20a3 fragment antigen binding

Ozorowski, G. , Schief, W.R. , Steichen, J.M. , Torres, J.L. , Ward, A.B.

Primary Citation of Related Structures: 6NF5


Proteins
Molecule Chains Sequence Length Organism Sequence
HIV-1 Env BG505 MD64 N332-GT5 SOSIP gp120 A 481 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLQCTNYAPKLRSMMRGEIKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVIIRSENITNNAKNILVQLNTPVQINCTRPSNNTVKSIRIGPGQAFYYFGDVLGHVRMAHCNISKATWNETLGKVVKQLRKHFGNNTIIRFAQSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSLILPCWIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
HIV-1 Env BG505 MD64 N332-GT5 SOSIP gp120 C 481 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLQCTNYAPKLRSMMRGEIKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVIIRSENITNNAKNILVQLNTPVQINCTRPSNNTVKSIRIGPGQAFYYFGDVLGHVRMAHCNISKATWNETLGKVVKQLRKHFGNNTIIRFAQSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSLILPCWIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
HIV-1 Env BG505 MD64 N332-GT5 SOSIP gp120 J 481 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLQCTNYAPKLRSMMRGEIKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVIIRSENITNNAKNILVQLNTPVQINCTRPSNNTVKSIRIGPGQAFYYFGDVLGHVRMAHCNISKATWNETLGKVVKQLRKHFGNNTIIRFAQSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSLILPCWIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
HIV-1 Env BG505 MD64 N332-GT5 SOSIP gp41 B 162 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AVGIGAVSLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEPQQHLLKDTHWGIKQLQARVLAVEHYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALDGTKHHHHHH
HIV-1 Env BG505 MD64 N332-GT5 SOSIP gp41 D 162 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AVGIGAVSLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEPQQHLLKDTHWGIKQLQARVLAVEHYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALDGTKHHHHHH
HIV-1 Env BG505 MD64 N332-GT5 SOSIP gp41 M 162 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AVGIGAVSLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEPQQHLLKDTHWGIKQLQARVLAVEHYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALDGTKHHHHHH
BG18-like precursor HMP1 fragment antigen binding heavy chain H 131 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGSYYWSWIRQPAGKGLEWIGRIYTSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAREGFTIFGVVTFSEGYYYGMDVWGKGTTVTVSS
BG18-like precursor HMP1 fragment antigen binding heavy chain E 131 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGSYYWSWIRQPAGKGLEWIGRIYTSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAREGFTIFGVVTFSEGYYYGMDVWGKGTTVTVSS
BG18-like precursor HMP1 fragment antigen binding heavy chain O 131 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGSYYWSWIRQPAGKGLEWIGRIYTSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAREGFTIFGVVTFSEGYYYGMDVWGKGTTVTVSS
BG18-like precursor HMP1 fragment antigen binding light chain L 106 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta SYELTQPPSVSVSPGQTARITCSGDALPKQYAYWYQQKPGQAPVLVIYKDSERPSGIPERFSGSSSGTTVTLTISGVQAEDEADYYCQSADSSGEVFGGGTKLTVL
BG18-like precursor HMP1 fragment antigen binding light chain F 106 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta SYELTQPPSVSVSPGQTARITCSGDALPKQYAYWYQQKPGQAPVLVIYKDSERPSGIPERFSGSSSGTTVTLTISGVQAEDEADYYCQSADSSGEVFGGGTKLTVL
BG18-like precursor HMP1 fragment antigen binding light chain P 106 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta SYELTQPPSVSVSPGQTARITCSGDALPKQYAYWYQQKPGQAPVLVIYKDSERPSGIPERFSGSSSGTTVTLTISGVQAEDEADYYCQSADSSGEVFGGGTKLTVL
base-binding RM20A3 fragment antigen binding heavy chain K 125 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta EVQLVETGGGLVQPGGSLKLSCRASGYTFSSFAMSWVRQAPGKGLEWVSLINDRGGLTFYVDSVKGRFTISRDNSKNTLSLQMHSLRDGDTAVYYCATGGMSSALQSSKYYFDFWGQGALVTVSS
base-binding RM20A3 fragment antigen binding heavy chain G 125 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta EVQLVETGGGLVQPGGSLKLSCRASGYTFSSFAMSWVRQAPGKGLEWVSLINDRGGLTFYVDSVKGRFTISRDNSKNTLSLQMHSLRDGDTAVYYCATGGMSSALQSSKYYFDFWGQGALVTVSS
base-binding RM20A3 fragment antigen binding heavy chain Q 125 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta EVQLVETGGGLVQPGGSLKLSCRASGYTFSSFAMSWVRQAPGKGLEWVSLINDRGGLTFYVDSVKGRFTISRDNSKNTLSLQMHSLRDGDTAVYYCATGGMSSALQSSKYYFDFWGQGALVTVSS
base-binding RM20A3 fragment antigen binding light chain N 128 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta ALTQPPSVSGSPGQSVTISCTGTSSDIGSYNYVSWYQQHPGKAPKLMIYDVTQRPSGVSDRFSGSKSGNTASLTISGLQADDEADYYCSAYAGRQTFYIFGGGTRLTVLGQPKASPTVTLFPPSSEEL
base-binding RM20A3 fragment antigen binding light chain I 128 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta ALTQPPSVSGSPGQSVTISCTGTSSDIGSYNYVSWYQQHPGKAPKLMIYDVTQRPSGVSDRFSGSKSGNTASLTISGLQADDEADYYCSAYAGRQTFYIFGGGTRLTVLGQPKASPTVTLFPPSSEEL
base-binding RM20A3 fragment antigen binding light chain R 128 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta ALTQPPSVSGSPGQSVTISCTGTSSDIGSYNYVSWYQQHPGKAPKLMIYDVTQRPSGVSDRFSGSKSGNTASLTISGLQADDEADYYCSAYAGRQTFYIFGGGTRLTVLGQPKASPTVTLFPPSSEEL
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2018-12-18
Deposition Author(s): Ozorowski, G. , Schief, W.R. , Steichen, J.M. , Torres, J.L. , Ward, A.B.