6N8M
Cryo-em structure of pre-lsg1 (pl) pre-60s ribosomal subunit
PDB DOI: 10.2210/pdb6n8m/pdb
Classification: RIBOSOME Organism(s): Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae S288C
Deposited: 2018-11-29 Deposition Author(s): Johnson, A.W. , Musalgaonkar, S. , Taylor, D.W. , Zhou, Y.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.5 Å
Cryo-em structure of pre-lsg1 (pl) pre-60s ribosomal subunit
Johnson, A.W. , Musalgaonkar, S. , Taylor, D.W. , Zhou, Y.
Primary Citation of Related Structures: 6N8M
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 60S ribosomal protein L15-A | A | 204 | Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae S288C | MGAYKYLEELQRKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVIYRVRVRRGNRKRPVPKGATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWVNQDSTYKYFEVILVDPQHKAIRRDARYNWICDPVHKHREARGLTATGKKSRGINKGHKFNNTKAGRRKTWKRQNTLSLWRYRK |
| 60S ribosomal protein L23-A | I | 137 | Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae S288C | MSGNGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECADLWPRVASNSGVVV |
| 60S ribosomal protein L24-A | J | 155 | Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae S288C | MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHKKGITEEVAKKRSRKTVKAQRPITGASLDLIKERRSLKPEVRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAFQKVAATSR |
| 60S ribosomal protein L25 | K | 142 | Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae S288C | MAPSAKATAAKKAVVKGTNGKKALKVRTSATFRLPKTLKLARAPKYASKAVPHYNRLDSYKVIEQPITSETAMKKVEDGNILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIANRIGYI |
| 60S ribosomal protein L27-A | M | 136 | Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae S288C | MAKFLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKLRF |
| 60S ribosomal protein L28 | N | 149 | Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae S288C | MPSRFTKTRKHRGHVSAGKGRIGKHRKHPGGRGMAGGQHHHRINMDKYHPGYFGKVGMRYFHKQQAHFWKPVLNLDKLWTLIPEDKRDQYLKSASKETAPVIDTLAAGYGKILGKGRIPNVPVIVKARFVSKLAEEKIRAAGGVVELIA |
| 60S ribosomal protein L29 | O | 59 | Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae S288C | MAKSKNHTAHNQTRKAHRNGIKKPKTYKYPSLKGVDPKFRRNHKHALHGTAKALAAAKK |
| 60S ribosomal protein L31-A | Q | 113 | Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae S288C | MAGLKDVVTREYTINLHKRLHGVSFKKRAPRAVKEIKKFAKLHMGTDDVRLAPELNQAIWKRGVKGVEYRLRLRISRKRNEEEDAKNPLFSYVEPVLVASAKGLQTVVVEEDA |
| 60S ribosomal protein L32 | R | 130 | Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae S288C | MASLPHPKIVKKHTKKFKRHHSDRYHRVAENWRKQKGIDSVVRRRFRGNISQPKIGYGSNKKTKFLSPSGHKTFLVANVKDLETLTMHTKTYAAEIAHNISAKNRVVILARAKALGIKVTNPKGRLALEA |
| 60S ribosomal protein L33-A | S | 107 | Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae S288C | MAESHRLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQDAQFYLGKRIAYVYRASKEVRGSKIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI |
| 60S ribosomal protein L16-A | B | 199 | Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae S288C | MSVEPVVVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQLAALGY |
| 60S ribosomal protein L2-A | D | 254 | Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae S288C | MGRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGIVKQIVHDSGRGAPLAKVVFRDPYKYRLREEIFIANEGVHTGQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKPGDRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKVISSDARGVIGVIAGGGRVDKPLLKAGRAFHKYRLKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLIAARRTGLLRGSQKTQD |
| 60S ribosomal protein L3 | E | 387 | Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae S288C | MSHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYSAKYAQDGAGIERELARIKKYASVVRVLVHTQIRKTPLAQKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKGDDEANGATSFDRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWIDTASKFGKGRFQTPAEKHAFMGTLKKDL |
| 60S ribosomal protein L4-A | F | 362 | Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae S288C | MSRPQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVLKSKKLRAGKGKYRNRRWTQRRGPLVVYAEDNGIVKALRNVPGVETANVASLNLLQLAPGAHLGRFVIWTEAAFTKLDQVWGSETVASSKVGYTLPSHIISTSDVTRIINSSEIQSAIRPAGQATQKRTHVLKKNPLKNKQVLLRLNPYAKVFAAEKLGSKKAEKTGTKPAAVFTETLKHD |
| 60S ribosomal protein L5 | G | 297 | Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae S288C | MAFQKDAKSSAYSSRFQTPFRRRREGKTDYYQRKRLVTQHKAKYNTPKYRLVVRFTNKDIICQIISSTITGDVVLAAAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQKLGLDETYKGVEEVEGEYELTEAVEDGPRPFKVFLDIGLQRTTTGARVFGALKGASDGGLYVPHSENRFPGWDFETEEIDPELLRSYIFGGHVSQYMEELADDDEERFSELFKGYLADDIDADSLEDIYTSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAALAGQQ |
| 60S ribosomal protein L6-A | H | 176 | Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae S288C | MSAQKAPKWYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEANLFPEQQNKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF |
| Ribosomal protein L12 | L | 165 | Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae S288C | MPPKFDPNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATKEFKGIKVTVQLKIQNRQAAASVVPSASSLVITALKEPPRDRKKDKNVKHSGNIQLDEIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEN |
| 60S ribosomal protein L30 | P | 105 | Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae S288C | MAPVKSQESINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVSILEAGDSDILTTLA |
| 60S ribosomal protein L34-A | T | 121 | Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae S288C | MAQRVTFRRRNPYNTRSNKIKVVKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRCANCVKERIIRAFLIEEQKIVKKVVKEQTEAAKKSEKKAKK |
| 60S ribosomal protein L35-A | U | 120 | Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae S288C | MAGVKAYELRTKSKEQLASQLVDLKKELAELKVQKLSRPSLPKIKTVRKSIACVLTVINEQQREAVRQLYKGKKYQPKDLRAKKTRALRRALTKFEASQVTEKQRKKQIAFPQRKYAIKA |
| 60S ribosomal protein L39 | Y | 51 | Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae S288C | MAAQKSFRIKQKMAKAKKQNRPLPQWIRLRTNNTIRYNAKRRNWRRTKMNI |
| 60S ribosomal export protein NMD3 | V | 518 | Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae S288C | MEFTPIDPHQHQNAATLLCCNCGTPIDGSTGLVMCYDCIKLTVDITQGIPREANISFCRNCERFLQPPGQWIRAELESRELLAICLRRLKGLTKVRLVDASFIWTEPHSRRIRIKLTVQGEAMTNTIIQQTFEVEYIVIAMQCPDCARSYTTNTWRATVQIRQKVPHKRTFLFLEQLILKHNAHVDTISISEAKDGLDFFYAQKNHAVKMIDFLNAVVPIKHKKSEELISQDTHTGASTYKFSYSVEIVPICKDDLVVLPKKLAKSMGNISQFVLCSKISNTVQFMDPTTLQTADLSPSVYWRAPFNALADVTQLVEFIVLDVDSTGISRGNRVLADITVARTSDLGVNDQVYYVRSHLGGICHAGDSVMGYFIANSNYNSDLFDGLNIDYVPDVVLVKKLYQRKSKKSRHWKLKRMAKEHKDIDASLDYNSRAQKQEMERAEKDYELFLQELEEDAELRQSVNLYKNREANVPPEEHEMDEDEDEDAPQINIDELLDELDEMTLEDGVENTPVESQQ |
| 60S ribosomal protein L37-A | W | 88 | Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae S288C | MGKGTPSFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPAAKTRSYNWGAKAKRRHTTGTGRMRYLKHVSRRFKNGFQTGSASKASA |
| Eukaryotic translation initiation factor 6 | X | 245 | Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae S288C | MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRLQDAQPESISGNLRDTLIETYS |
| Ubiquitin-60S ribosomal protein L40 | Z | 128 | Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae S288C | MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKYNCDKSVCRKCYARLPPRATNCRKRKCGHTNQLRPKKKLK |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 5.8S RNA | c | 158 | NA | AAACUUUCAACAACGGAUCUCUUGGUUCUCGCAUCGAUGAAGAACGCAGCGAAAUGCGAUACGUAAUGUGAAUUGCAGAAUUCCGUGAAUCAUCGAAUCUUUGAACGCACAUUGCGCCCCUUGGUAUUCCAGGGGGCAUGCCUGUUUGAGCGUCAUUU |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2018-11-29 Deposition Author(s): Johnson, A.W. , Musalgaonkar, S. , Taylor, D.W. , Zhou, Y.