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6KUR

Structure of influenza d virus polymerase bound to vrna promoter in mode b conformation (class b1)

PDB DOI: 10.2210/pdb6kur/pdb

Classification: VIRAL PROTEIN/RNA
Organism(s): Influenza D Virus (D/Swine/Oklahoma/1334/2011) , Synthetic Construct

Deposited: 2019-09-02
Deposition Author(s): Gao, G.F. , Peng, Q. , Peng, R. , Qi, J. , Shi, Y.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.7 Å

6kur
Literature

Structure of influenza d virus polymerase bound to vrna promoter in mode b conformation (class b1)

Gao, G.F. , Peng, Q. , Peng, R. , Qi, J. , Shi, Y.

Primary Citation of Related Structures: 6KUR


Proteins
Molecule Chains Sequence Length Organism Sequence
Polymerase 3 A 710 Influenza D Virus (D/Swine/Oklahoma/1334/2011) , Synthetic Construct MSSVIREIAKRFLEQATINIAEEVVREYGDHERTMISVGVHFQACCLISDEYTLEDETTPRYVLLEGLKRQEAISKQNNICSTLGLEPLRNLADIFDRKTRRFLEVGITKRESDEYYQEKFNKIGNDMDIHVFTYEGKYFSNNPNGLEDIQKTRIFTFLSFVSDELRKENMFTEMYVTEEGAPELEMYKSKLFIAMRDESVPLPYINYEHLRTRCETFKRNQAECEAKVADVASRLKIKLEHLEENKLRPLEIPKEKEAPYTHKFLMKDAWFFAKPHDSERAQPQQILYDFFEAANMGFMTTSPKPIFGKQGLMYHSLWGQTKRAIKDKRNELEPSEQRDFLCGIGRASKKIQEDKWQESREEEFKQEETKGAAKRGFPTWFNEEWLWAMRDSGDGDNKIGDWIPMAEMPPCKNEMEDYAKKMCEELESKIQGTNCAREMSKLIHTIGSLHTECRNFPGKVKIVPIYCRGTLRGESTDCLFGIAIKGKSHLNKDDGMYTVVTFEFSTEEPNPSKHEKYTVFEAGTVPVEAVVLTPKRERVLKEKKLFLYCRTTGMSKLKNDWFSKCRRCLIPTMETVEQIVLKECALKEENRVSEMLENKRAWIAHENGENLTRLVSTKLKDLCRMLIVTQFYYCIYNDNQLEGFCNEQKKFLMFLQADKDSKSAFTFNQKGLYEKIEECIVSNPLCIFLADRLNKLFLVAKSNGAKYFE
RNA-directed RNA polymerase catalytic subunit B 753 Influenza D Virus (D/Swine/Oklahoma/1334/2011) , Synthetic Construct MEINPYLLMLNNDITSMISLTYPYTGAPPMSHGTSTKYSMETVSRTYSYSRTKKEVPSGIFPIERRKFCNTIEDKENLEKPNGNVDINFMLSLAEMLEEKMGKGFFKFCANEAEAEILKMHFSKLTEGRQTYDWTSERNMPAATALQLTVDAIQETQGTFKGTTMVEYCNKILEMMDWPEVKFKKVRMIVQRHWDPKTKKEIKMKSPTLMITKIGREEFIKRICTINTMAKDGERGKYKRRAIATPGMGIRPFSKIVETLAQKICERLAESGLPVGGNEKKAKLKTTVSSTNSKLQEGQFMVNITGDNSKWNECQQPEAYLAMLAYITKDSSNLMKDLCSVAPTLFCNKYVKMGQGFRAKNKRKTKEIVIPAKKMKERKELMNAEWRDLFETIEPYMDGECCFLGGGMLMGMFNMLSTVFGVMTLNYREEALARRNCYWTGLQSSDDFVLFCISRTWPEMEMTILKFIAVCKLMGINMSLEKSYGCLPELFEFTSMFFSGDFVSNIALELPAFTTAGMNEGTDFTAAMSVIRTNMINNGLSPGTALMALRICLQEFRATYRVHPYDSGVKNHRMKIIRKFIETIENKDGLLISDGGKLMNNISSLHIPEEILKEDLMDPSYRNRVFNPRNPFTQFEKTVDIFKASGPIRVEENEAVVSTHSFRTRSNRTLLNTDMRAMALEEKRYQVVCNMYRSVFESADVNTPIGSMSMGEAIEAKILDRARTQFENGIIGGEEYSEIKRLIEDAKRQRLSV
Polymerase PB2 C 772 Influenza D Virus (D/Swine/Oklahoma/1334/2011) , Synthetic Construct MSLLLTLAKEYANLTKDKKSCKLLSQGTVSSYTTFKKWTTSRKEKNPSLRMRWAMGSKFPIMANREILEEAGIPEQWEGIDLWSKKDDVSKLGMVLASPAAITYWNFCGPGVDNSSVIKDVYKAKFMKKERWRETLWGPMNFELVGKQRRVVETQPVEIKLNQKEIKELTMWVLFEDEANLASKFIQENFSLVLSLRELYKGKAVNKDVAAFMIAHQFSPEKRFLPTFGPIRPERMELLHCLGGDFWKIEAVTAGSLNEEQKKRDVRAVARKICLRASVDLFTPAEKIRDYIASVTMRFGTVERTFEDVIRNSDDISAEVTLCKAALGCELGKSMSFGNLNLRKVSGEAETMEKTVYWGLKPIKYKCWRGEETFYCELRKVTCMFRRSEGLDWANIGPGSPEERRELLAMVMIFCRDGRFFESAPVNIDESFFRTRLNKEIPYQYVLLKWVRQSRDNLDALLSTRGLIPAHIGQFGKGMGIDGSSSSSMVYKGVMLSKTPIDIVESKEKHRLFLNDNIEAVTERGAMVASIMDLSEDNRETFNDVTFNHVDLAVLKDEKTAIIKIYRSLVERINTDDDGLPALIMGKRYLELYQLDEVKDAVGLIPKRMLGAYSYQARQLIQSQIKNDSYSLPEIIKLLPFCYSPPKKMLFDGTFHFKNQMYVRPGINTNLFSFSKTDKSKIYVNGSAVKIKLVLGDDEMDTSLAFVEGFQVCEYDPRAPLIPRRDLRLIGFGKKVRVFVGQGQEKTLVRTSSKRAASHDVSKNIRRMRLEV

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
3'-vRNA r 14 NA CUCCUGCUUAUGCU
5'-vRNA v 15 NA AGCAGUAGCAAGGAG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2019-09-02
Deposition Author(s): Gao, G.F. , Peng, Q. , Peng, R. , Qi, J. , Shi, Y.