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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6KLW

Complex structure of iota toxin enzymatic component (ia) and binding component (ib) pore with long stem

PDB DOI: 10.2210/pdb6klw/pdb

Classification: TOXIN
Organism(s): Clostridium Perfringens

Deposited: 2019-07-30
Deposition Author(s): Iwasaki, K. , Kawamoto, A. , Mitsuoka, K. , Tsuge, H. , Yamada, T. , Yoshida, T.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.9 Å

6klw
Literature

Complex structure of iota toxin enzymatic component (ia) and binding component (ib) pore with long stem

Iwasaki, K. , Kawamoto, A. , Mitsuoka, K. , Tsuge, H. , Yamada, T. , Yoshida, T.

Primary Citation of Related Structures: 6KLW


Proteins
Molecule Chains Sequence Length Organism Sequence
Iota toxin component Ib A 666 Clostridium Perfringens SAAWEDEDLDTDNDNIPDAYEKNGYTIKDSIAVKWNDSFAEQGYKKYVSSYLESNTAGDPYTDYQKASGSIDKAIKLEARDPLVAAYPVVGVGMENLIISTNEHASSDQGKTVSRATTNSKTDANTVGVSISAGYQNGFTGNITTSYSHTTDNSTAVQDSNGESWNTGLSINKGESAYINANVRYYNTGTAPMYKVTPTTNLVLDGETLATIKAQDNQIGNNLSPNETYPKKGLSPLALNTMDQFNARLIPINYDQLKKLDSGKQIKLETTQVSGNYGTKNSQGQIITEGNSWSNYISQIDSVSASIILDTGSQTFERRVAAKEQGNPEDKTPEITIGEAIKKAFSATKNGELLYFNGIPIDESCVELIFDDNTSEIIKEQLKYLDDKKIYNVKLERGMNILIKVPSYFTNFDEYNNFPASWSNIDTKNQDGLQSVANKLSGETKIIIPMSKLKPYKRYVFSGYSKDPSTSNSITVNIKSKEQKTDYLVPEKDYTKFSYEFETTGKDSSDIEITLTSSGVIFLDNLSITELNSTPEILKEPEIKVPSDQEILDAHNKYYADIKLDTNTGNTYIDGIYFEPTQTNKEALDYIQKYRVEATLQYSGFKDIGTKDKEIRNYLGDQNQPKTNYINFRSYFTSGENVMTYKKLRIYAVTPDNRELLVLSVN
Iota toxin component Ib B 666 Clostridium Perfringens SAAWEDEDLDTDNDNIPDAYEKNGYTIKDSIAVKWNDSFAEQGYKKYVSSYLESNTAGDPYTDYQKASGSIDKAIKLEARDPLVAAYPVVGVGMENLIISTNEHASSDQGKTVSRATTNSKTDANTVGVSISAGYQNGFTGNITTSYSHTTDNSTAVQDSNGESWNTGLSINKGESAYINANVRYYNTGTAPMYKVTPTTNLVLDGETLATIKAQDNQIGNNLSPNETYPKKGLSPLALNTMDQFNARLIPINYDQLKKLDSGKQIKLETTQVSGNYGTKNSQGQIITEGNSWSNYISQIDSVSASIILDTGSQTFERRVAAKEQGNPEDKTPEITIGEAIKKAFSATKNGELLYFNGIPIDESCVELIFDDNTSEIIKEQLKYLDDKKIYNVKLERGMNILIKVPSYFTNFDEYNNFPASWSNIDTKNQDGLQSVANKLSGETKIIIPMSKLKPYKRYVFSGYSKDPSTSNSITVNIKSKEQKTDYLVPEKDYTKFSYEFETTGKDSSDIEITLTSSGVIFLDNLSITELNSTPEILKEPEIKVPSDQEILDAHNKYYADIKLDTNTGNTYIDGIYFEPTQTNKEALDYIQKYRVEATLQYSGFKDIGTKDKEIRNYLGDQNQPKTNYINFRSYFTSGENVMTYKKLRIYAVTPDNRELLVLSVN
Iota toxin component Ib C 666 Clostridium Perfringens SAAWEDEDLDTDNDNIPDAYEKNGYTIKDSIAVKWNDSFAEQGYKKYVSSYLESNTAGDPYTDYQKASGSIDKAIKLEARDPLVAAYPVVGVGMENLIISTNEHASSDQGKTVSRATTNSKTDANTVGVSISAGYQNGFTGNITTSYSHTTDNSTAVQDSNGESWNTGLSINKGESAYINANVRYYNTGTAPMYKVTPTTNLVLDGETLATIKAQDNQIGNNLSPNETYPKKGLSPLALNTMDQFNARLIPINYDQLKKLDSGKQIKLETTQVSGNYGTKNSQGQIITEGNSWSNYISQIDSVSASIILDTGSQTFERRVAAKEQGNPEDKTPEITIGEAIKKAFSATKNGELLYFNGIPIDESCVELIFDDNTSEIIKEQLKYLDDKKIYNVKLERGMNILIKVPSYFTNFDEYNNFPASWSNIDTKNQDGLQSVANKLSGETKIIIPMSKLKPYKRYVFSGYSKDPSTSNSITVNIKSKEQKTDYLVPEKDYTKFSYEFETTGKDSSDIEITLTSSGVIFLDNLSITELNSTPEILKEPEIKVPSDQEILDAHNKYYADIKLDTNTGNTYIDGIYFEPTQTNKEALDYIQKYRVEATLQYSGFKDIGTKDKEIRNYLGDQNQPKTNYINFRSYFTSGENVMTYKKLRIYAVTPDNRELLVLSVN
Iota toxin component Ib D 666 Clostridium Perfringens SAAWEDEDLDTDNDNIPDAYEKNGYTIKDSIAVKWNDSFAEQGYKKYVSSYLESNTAGDPYTDYQKASGSIDKAIKLEARDPLVAAYPVVGVGMENLIISTNEHASSDQGKTVSRATTNSKTDANTVGVSISAGYQNGFTGNITTSYSHTTDNSTAVQDSNGESWNTGLSINKGESAYINANVRYYNTGTAPMYKVTPTTNLVLDGETLATIKAQDNQIGNNLSPNETYPKKGLSPLALNTMDQFNARLIPINYDQLKKLDSGKQIKLETTQVSGNYGTKNSQGQIITEGNSWSNYISQIDSVSASIILDTGSQTFERRVAAKEQGNPEDKTPEITIGEAIKKAFSATKNGELLYFNGIPIDESCVELIFDDNTSEIIKEQLKYLDDKKIYNVKLERGMNILIKVPSYFTNFDEYNNFPASWSNIDTKNQDGLQSVANKLSGETKIIIPMSKLKPYKRYVFSGYSKDPSTSNSITVNIKSKEQKTDYLVPEKDYTKFSYEFETTGKDSSDIEITLTSSGVIFLDNLSITELNSTPEILKEPEIKVPSDQEILDAHNKYYADIKLDTNTGNTYIDGIYFEPTQTNKEALDYIQKYRVEATLQYSGFKDIGTKDKEIRNYLGDQNQPKTNYINFRSYFTSGENVMTYKKLRIYAVTPDNRELLVLSVN
Iota toxin component Ib E 666 Clostridium Perfringens SAAWEDEDLDTDNDNIPDAYEKNGYTIKDSIAVKWNDSFAEQGYKKYVSSYLESNTAGDPYTDYQKASGSIDKAIKLEARDPLVAAYPVVGVGMENLIISTNEHASSDQGKTVSRATTNSKTDANTVGVSISAGYQNGFTGNITTSYSHTTDNSTAVQDSNGESWNTGLSINKGESAYINANVRYYNTGTAPMYKVTPTTNLVLDGETLATIKAQDNQIGNNLSPNETYPKKGLSPLALNTMDQFNARLIPINYDQLKKLDSGKQIKLETTQVSGNYGTKNSQGQIITEGNSWSNYISQIDSVSASIILDTGSQTFERRVAAKEQGNPEDKTPEITIGEAIKKAFSATKNGELLYFNGIPIDESCVELIFDDNTSEIIKEQLKYLDDKKIYNVKLERGMNILIKVPSYFTNFDEYNNFPASWSNIDTKNQDGLQSVANKLSGETKIIIPMSKLKPYKRYVFSGYSKDPSTSNSITVNIKSKEQKTDYLVPEKDYTKFSYEFETTGKDSSDIEITLTSSGVIFLDNLSITELNSTPEILKEPEIKVPSDQEILDAHNKYYADIKLDTNTGNTYIDGIYFEPTQTNKEALDYIQKYRVEATLQYSGFKDIGTKDKEIRNYLGDQNQPKTNYINFRSYFTSGENVMTYKKLRIYAVTPDNRELLVLSVN
Iota toxin component Ib F 666 Clostridium Perfringens SAAWEDEDLDTDNDNIPDAYEKNGYTIKDSIAVKWNDSFAEQGYKKYVSSYLESNTAGDPYTDYQKASGSIDKAIKLEARDPLVAAYPVVGVGMENLIISTNEHASSDQGKTVSRATTNSKTDANTVGVSISAGYQNGFTGNITTSYSHTTDNSTAVQDSNGESWNTGLSINKGESAYINANVRYYNTGTAPMYKVTPTTNLVLDGETLATIKAQDNQIGNNLSPNETYPKKGLSPLALNTMDQFNARLIPINYDQLKKLDSGKQIKLETTQVSGNYGTKNSQGQIITEGNSWSNYISQIDSVSASIILDTGSQTFERRVAAKEQGNPEDKTPEITIGEAIKKAFSATKNGELLYFNGIPIDESCVELIFDDNTSEIIKEQLKYLDDKKIYNVKLERGMNILIKVPSYFTNFDEYNNFPASWSNIDTKNQDGLQSVANKLSGETKIIIPMSKLKPYKRYVFSGYSKDPSTSNSITVNIKSKEQKTDYLVPEKDYTKFSYEFETTGKDSSDIEITLTSSGVIFLDNLSITELNSTPEILKEPEIKVPSDQEILDAHNKYYADIKLDTNTGNTYIDGIYFEPTQTNKEALDYIQKYRVEATLQYSGFKDIGTKDKEIRNYLGDQNQPKTNYINFRSYFTSGENVMTYKKLRIYAVTPDNRELLVLSVN
Iota toxin component Ib G 666 Clostridium Perfringens SAAWEDEDLDTDNDNIPDAYEKNGYTIKDSIAVKWNDSFAEQGYKKYVSSYLESNTAGDPYTDYQKASGSIDKAIKLEARDPLVAAYPVVGVGMENLIISTNEHASSDQGKTVSRATTNSKTDANTVGVSISAGYQNGFTGNITTSYSHTTDNSTAVQDSNGESWNTGLSINKGESAYINANVRYYNTGTAPMYKVTPTTNLVLDGETLATIKAQDNQIGNNLSPNETYPKKGLSPLALNTMDQFNARLIPINYDQLKKLDSGKQIKLETTQVSGNYGTKNSQGQIITEGNSWSNYISQIDSVSASIILDTGSQTFERRVAAKEQGNPEDKTPEITIGEAIKKAFSATKNGELLYFNGIPIDESCVELIFDDNTSEIIKEQLKYLDDKKIYNVKLERGMNILIKVPSYFTNFDEYNNFPASWSNIDTKNQDGLQSVANKLSGETKIIIPMSKLKPYKRYVFSGYSKDPSTSNSITVNIKSKEQKTDYLVPEKDYTKFSYEFETTGKDSSDIEITLTSSGVIFLDNLSITELNSTPEILKEPEIKVPSDQEILDAHNKYYADIKLDTNTGNTYIDGIYFEPTQTNKEALDYIQKYRVEATLQYSGFKDIGTKDKEIRNYLGDQNQPKTNYINFRSYFTSGENVMTYKKLRIYAVTPDNRELLVLSVN
Iota toxin component Ia H 417 Clostridium Perfringens GSHMAFIERPEDFLKDKENAIQWEKKEAERVEKNLDTLEKEALELYKKDSEQISNYSQTRQYFYDYQIESNPREKEYKNLRNAISKNKIDKPINVYYFESPEKFAFNKEIRTENQNEISLEKFNELKETIQDKLFKQDGFKDVSLYEPGNGDEKPTPLLIHLKLPKNTGMLPYINSNDVKTLIEQDYSIKIDKIVRIVIEGKQYIKAEASIVNSLDFKDDVSKGDLWGKENYSDWSNKLTPNELADVNDYMRGGYTAINNYLISNGPLNNPNPELDSKVNNIENALKLTPIPSNLIVYRRSGPQEFGLTLTSPEYDFNKIENIDAFKEKWEGKVITYPNFISTSIGSVNMSAFAKRKIILRINIPKDSPGAYLSAIPGYAGEYEVLLNHGSKFKINKVDSYKDGTVTKLILDATLIN
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2019-07-30
Deposition Author(s): Iwasaki, K. , Kawamoto, A. , Mitsuoka, K. , Tsuge, H. , Yamada, T. , Yoshida, T.