6KF9
Cryo-em structure of thermococcus kodakarensis rna polymerase
PDB DOI: 10.2210/pdb6kf9/pdb
Classification: TRANSCRIPTION Organism(s): Thermococcus Kodakarensis Kod1 , Synthetic Construct
Deposited: 2019-07-07 Deposition Author(s): Bartlett, M.S. , Cha, J.S. , Cho, H.-S. , Hyun, J. , Jeong, H. , Jun, S.-H. , Kim, H. , Murakami, K.S.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.79 Å
Cryo-em structure of thermococcus kodakarensis rna polymerase
Bartlett, M.S. , Cha, J.S. , Cho, H.-S. , Hyun, J. , Jeong, H. , Jun, S.-H. , Kim, H. , Murakami, K.S.
Primary Citation of Related Structures: 6KF9
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA-directed RNA polymerase subunit | A | 906 | Thermococcus Kodakarensis Kod1 , Synthetic Construct | MQSMKKVIGSIEFGILSPQEIRKMSAAEITVPDTYDDDGYPIEGGLMDKRLGVIDPGLRCETCGARAGECPGHFGHIELARPVIHVGFAKTIHRVLESTCRECGRIKLTDEEIEEYMQKFEVMGDRKGAVDKLIKEIHKKAKERMVCPHCGAPQFPIKFERPTIYWELRKDEEGNEYKHRMMPSEVRDRLEKIPDKDLPLLGLHPEKSRPEWMVLTVLPVPPVTMRPSITLESGIRAEDDLTHKLVDIIRINNRLKSNIEAGAPQLIIEDLWDLLQYHVTTYINNETSGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMISINEVGVPLAVAMELTVPEKVTEFNYEKLKQRVLNGPEKYPGANYVIDPEGRRIRLMESNRELIAEKLDIGWTVERHLEDGDVVLFNRQPSLHRMSIMAHRVRVMPYRTFRLNLPVCPPYNADFDGDEMNLHVPQTEEAQAEAKILMEVQNHIISPRYGGPLIAGIQDHISGGYLLTREGAYFTRYEVEQMLMFAGMDVNELPEPDKYENGEPLWSGKTIFSLLLPDDLTIWYRNKLCDEPERCEALEKLIEEKLIPDPEEVRKLAYDGFVYIQNGKLLSGAVDKKAYGREDGKLLDIIVREYGVERARQFLDQVTKLTIWVITHKGFTTAIDDEDLPQEAIDRIHEIIREAEEKVQRLIEAYKRGELEPLPGKTLEETLESKIMAVLAEARDNAGKVAERYLGMNNHAVIMAKTGARGKILNITQMAAMLGQQSIRGKRLYRGYRGRVLTHFKPGDLGARARGFVTNSYKSGLTPQEYFFHAMGGREGLVDTAVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTGIIVQFKYGEDGVDPMKSWQGKTVDVDRVIVRTLLKMRGGGE |
| DNA-directed RNA polymerase subunit N | N | 65 | Thermococcus Kodakarensis Kod1 , Synthetic Construct | MIVPVRCFTCGKVLADKYYEFKKRVEAGEDPGKVLDDLGVERYCCRRTLLSHVELIDQVMVYKVY |
| DNA-directed RNA polymerase subunit P | P | 49 | Thermococcus Kodakarensis Kod1 , Synthetic Construct | MATAVYRCAKCGKEVELDLATAREVRCPYCGSKILYKPRPRVARRVKAI |
| Transcription factor E | G | 185 | Thermococcus Kodakarensis Kod1 , Synthetic Construct | MAKRKNKELLEIAQEIGGEEAVEVVKALEKMKEATDEELAEATGIRVNTVRRILYMLNDEGLADFKRIRDPETGWYYYYWRLETKKLPEIIRSRKMAELKKLKEMLEEETSEIYYWCGTEGHPKLTFDEAMEYEFQCPICGKMLMQYDNTHIIEELKRRIEELEIELGLKKKPRKTSKKKKSRSE |
| DNA-directed RNA polymerase subunit beta | B | 1123 | Thermococcus Kodakarensis Kod1 , Synthetic Construct | MSRGVTVTEPTLTPDELWLVMESYWKEKGFVRQHLDSYNAFIDHGLQDVVNEFGEVVPDIPNFKVKFGKIRIGQPEFQEAQGQRRPLYPMDARIRNLTYSAPLYLEMIPVVNGIEQEPVEVRIGELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIINGSERVIVSIEDLAPNKTLVERDERQNKVVAKVFSYRHGYRALITVERKKDGILYVTIPNVPKPVKFVYVMRALGLLTDKEIVEAVSDDPRIQQVLFDNLEDASDISTQEEALDYIGRLALPGQPKEYRLRRAEHIIDNNLLPHMGVDPENRRAKAYYLGMMALKVLELSLGLRGEDDKDHYANKRLKLAGDLLKDLFRVAFGQLVKDMQYQMTKTYQRKGERYTFENIQRFVRNSIRPDVLSERIEHALATGSWPGGRTGVSQLLDRTNYMSTLSHLRRVTSPLSRDQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMSQITTGIPEREVREYLMKMGVVPIEERRPAPGLYRVYLNGVLIGTVEDGRKLVERIRADRRAGKISDVINVALYEDEEVKEVYINSDDGRVRRPLIVVENGKPKLTREHVEGIKNGTLTWSDLIRMGVIEYLDAEEEENAYVATWPWEVTEEHTHLELMPAAILGIPASLVPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGFEDRPAGQNFVVAVLSYHGYNMEDAVIINKASIERGLARSTFFRTYEAEEKRYLGGQKDNFEVPSPNIQGYLGEKYYRHLDEDGLIFPESKVEGKDVLVGRTSPPRFIEEQSSLGSMVLQGRRETSVTVRPSEKGVVDKVIVTETGDGTKLVKVTVRDLRIPELGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLTGRRVDGTAFIGEPEEKLRKELEELGFKHSGREIMYDGITGRRLEADIFIGVIYYQRLHHMVADKMHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKTEVWVCESCGHLALEDKRRGKVYCPVCGEDERISKVEMSYAFKLLLDELKAMVIRPSLRLKDRV |
| DNA-directed RNA polymerase subunit A'' | C | 391 | Thermococcus Kodakarensis Kod1 , Synthetic Construct | MVAEKTIKSMVSKAELPDNIKEELYAKLIEYNEKYKLKKDEIQAIIDETVREYQKALIEPGEAVGTVAAQSIGEPSTQMTLNTFHYAGVAEINVTLGLPRIIEIVDARKNPSTPIMTVYLDEEHRYDRDKALEVARRIEGTTLENLAREETIDILNMEYVVEIDPERLEKAGLDMEKVVRKLTGSFKSAEFEAEGYTLVVRPKKVTKLSDLRKIAEKVKKHRLKGLSGVGKTIIRKEGDEYVIYTEGSNFKQVLKVPGVDPTRTRTNNIWEIAEVLGIEAARNAIIDEIVSTMREQGLEVDVRHIMLVADMMTLDGVIRPIGRHGIVGEKASVLARAAFEITTQHLFAAAERGEVDPLNGVVENVLIGQPVPVGTGIVKLAMSLPLRPKRE |
| DNA-directed RNA polymerase subunit D | D | 259 | Thermococcus Kodakarensis Kod1 , Synthetic Construct | MVEFKILEKRPDSIKFIVSGVDVPFANALRRTILSEVPTFAVDEVEFLENDSALFDEIIAHRLAMIPLTTPHERFSLDALELDDYTVTLSLEAEGPGMVYSGDLKSSDGDVKPANPNIPIVKLAEGQRLTFNAYARLGRGKDHAKWQPGFVYYKYLTKIHVSKDVPDWEELKELAERRGLPVEESDEEIVITTIKAFYLPRKFEEHMGKGIREEIVPGSFVFTVETNGELPVEEIVSIALKILMRKSDRFINELHKLAD |
| DNA-directed RNA polymerase, subunit E | E | 190 | Thermococcus Kodakarensis Kod1 , Synthetic Construct | MYKLLKVKDVVRIPPRMFTMDPKEAAKIVLRETYEGIYDRDEGVVLAILDVEEISEGVIVPGDGATYHEAIFNVLVWEPRNQEVVEGEVVEMMPYGAFIRIGPMDGLVHISQLMDDYVVFDEKNRQFIGKETNRVLKLGDYVRARIIGVSVKSRVIRENKINMTMRQPGLGKFEWIEKEKKKAKEESKGE |
| DNA-directed RNA polymerase, subunit F | F | 122 | Thermococcus Kodakarensis Kod1 , Synthetic Construct | MIGRKKLEEHYITIAEAKELLERRHAEGLAENPEEPMFYEARVSLEHAERFAKLKPEQARELKEKLMGLFDWINERIAAKLVDILPEDYLDIRVIFAKEEYMPTPEEAEEIIKVIDEYRPLE |
| DNA-directed RNA polymerase subunit H | H | 82 | Thermococcus Kodakarensis Kod1 , Synthetic Construct | MAAKKEFNIFDHVLVPEHRILSEEEKEELLKKYRIRISQLPQIKASDPAVVALGAKPGDVIEIKRKSPTAGYYYYYRLVVED |
| DNA-directed RNA polymerase subunit K | K | 57 | Thermococcus Kodakarensis Kod1 , Synthetic Construct | MFRYTRFEKARIIGARALQIAMGAPVLIDVPEGITPLQAALLEFEKGVIPITVIRPS |
| DNA-directed RNA polymerase subunit L | L | 94 | Thermococcus Kodakarensis Kod1 , Synthetic Construct | MRIEVIRREENLLEFYLEGEDHTFANLLTETLHENEHVTFAGYTIEHPITMARKPRFKVVTDGKITPEKALEEAAQKIFDRAREVLEAWKAAIE |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2019-07-07 Deposition Author(s): Bartlett, M.S. , Cha, J.S. , Cho, H.-S. , Hyun, J. , Jeong, H. , Jun, S.-H. , Kim, H. , Murakami, K.S.